Results 21 - 40 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 19979 | 0.66 | 0.902385 |
Target: 5'- -gAUAUG-AUCGGCGAC-CGCGccuauGACg -3' miRNA: 3'- cgUGUGCuUAGCCGCUGaGCGCu----UUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 29107 | 0.66 | 0.902385 |
Target: 5'- uGCACGCaga--GGCuuGGCUCGCGcGAACg -3' miRNA: 3'- -CGUGUGcuuagCCG--CUGAGCGC-UUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 46027 | 0.66 | 0.902385 |
Target: 5'- uGCACGcCGAAcgccgcugCGGCGGCuugugcguauUCGCGGAu- -3' miRNA: 3'- -CGUGU-GCUUa-------GCCGCUG----------AGCGCUUug -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 19497 | 0.66 | 0.897456 |
Target: 5'- -aACGCGAugAUCGGCaacuauauccaguccGACaacuacaUCGCGggGCg -3' miRNA: 3'- cgUGUGCU--UAGCCG---------------CUG-------AGCGCuuUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 9336 | 0.66 | 0.895302 |
Target: 5'- aGUAUaucgGCGAGUCGgaucaaGCGACgggcgcgagCGCGAGGCu -3' miRNA: 3'- -CGUG----UGCUUAGC------CGCUGa--------GCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 17884 | 0.66 | 0.895302 |
Target: 5'- cCGC-CGGAUCGGCGgGCgcaucCGCGcAGCg -3' miRNA: 3'- cGUGuGCUUAGCCGC-UGa----GCGCuUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 47942 | 0.67 | 0.887942 |
Target: 5'- aGCACACGAucgAUCGcGCGcgccaACUCgguGCGAAu- -3' miRNA: 3'- -CGUGUGCU---UAGC-CGC-----UGAG---CGCUUug -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 18791 | 0.67 | 0.887942 |
Target: 5'- cGUGCgAUGAGUCGGaucgGAUcacgcugauuguUCGCGAAGCg -3' miRNA: 3'- -CGUG-UGCUUAGCCg---CUG------------AGCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 45911 | 0.67 | 0.887942 |
Target: 5'- cGCGCGCGAugcgcagcacGUCGuucuGCGcaaUCGCGAAAUc -3' miRNA: 3'- -CGUGUGCU----------UAGC----CGCug-AGCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 21165 | 0.67 | 0.887942 |
Target: 5'- cGCGCGCGGcUCGaGCaacGGCUcaucgagcaCGCGGAGCc -3' miRNA: 3'- -CGUGUGCUuAGC-CG---CUGA---------GCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 9419 | 0.67 | 0.887942 |
Target: 5'- gGCAuCGUGAAacUCGGCGugucGCUCGCGGccgGGCg -3' miRNA: 3'- -CGU-GUGCUU--AGCCGC----UGAGCGCU---UUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 40757 | 0.67 | 0.88031 |
Target: 5'- uGCAUGCGAuuUUGGcCGACUgUGuCGAGGCa -3' miRNA: 3'- -CGUGUGCUu-AGCC-GCUGA-GC-GCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 1222 | 0.67 | 0.88031 |
Target: 5'- cGCACGCccccagugCGGaCGACg-GCGAAACa -3' miRNA: 3'- -CGUGUGcuua----GCC-GCUGagCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 45558 | 0.67 | 0.88031 |
Target: 5'- cCGCGCGcGUCaGCGcCUCGaCGAGAUu -3' miRNA: 3'- cGUGUGCuUAGcCGCuGAGC-GCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 9495 | 0.67 | 0.88031 |
Target: 5'- cGCAgGCGGcgacagcguggGUCGGCGcccggcgagcGCUCGUcgagGAGACg -3' miRNA: 3'- -CGUgUGCU-----------UAGCCGC----------UGAGCG----CUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 4350 | 0.67 | 0.88031 |
Target: 5'- cCGCcgGCGAGaaGGCG-CUCGCuGAAGCa -3' miRNA: 3'- cGUG--UGCUUagCCGCuGAGCG-CUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 46637 | 0.67 | 0.872411 |
Target: 5'- uGCGgACGuagUGGCGACaCGCGGcaaGACg -3' miRNA: 3'- -CGUgUGCuuaGCCGCUGaGCGCU---UUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 42418 | 0.67 | 0.872411 |
Target: 5'- cGCGCucccgccaACGAGcccacccgCGGCGAaucgCGCGAAGCc -3' miRNA: 3'- -CGUG--------UGCUUa-------GCCGCUga--GCGCUUUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 45445 | 0.67 | 0.871607 |
Target: 5'- gGCGuCGCGAuuGUCgGGCGACcaguugcUCGCGGcaauGACa -3' miRNA: 3'- -CGU-GUGCU--UAG-CCGCUG-------AGCGCU----UUG- -5' |
|||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 44413 | 0.67 | 0.864253 |
Target: 5'- aCGCGCGAuuacugccucGUUGGCGACuagauUCGCGuGAUc -3' miRNA: 3'- cGUGUGCU----------UAGCCGCUG-----AGCGCuUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home