miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 34042 0.67 0.864253
Target:  5'- aGCGCAaGGAUCGucgcuggcuucGCGGCUCG-GAAAUa -3'
miRNA:   3'- -CGUGUgCUUAGC-----------CGCUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 10391 0.68 0.847187
Target:  5'- uGCGCACGAAgcaagaGGCG--UCGCGGGc- -3'
miRNA:   3'- -CGUGUGCUUag----CCGCugAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 11043 0.68 0.847187
Target:  5'- gGCuuGCGAGUCgcaaaGGCuGACU-GCGAGGCa -3'
miRNA:   3'- -CGugUGCUUAG-----CCG-CUGAgCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45068 0.68 0.847187
Target:  5'- gGCGgGCGAGcgCGGCuacgcGCUCGUGAAGu -3'
miRNA:   3'- -CGUgUGCUUa-GCCGc----UGAGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 2488 0.68 0.847187
Target:  5'- cCAgACGGAaCGcGUGuuCUCGCGAAGCa -3'
miRNA:   3'- cGUgUGCUUaGC-CGCu-GAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 23568 0.68 0.838295
Target:  5'- aGCGCAuCGGcaacgucgCGGCGAUgcuaCGCGAGAUc -3'
miRNA:   3'- -CGUGU-GCUua------GCCGCUGa---GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 7260 0.68 0.838295
Target:  5'- aGCGCACG-GUCGGCacCUCGaCGccGAACa -3'
miRNA:   3'- -CGUGUGCuUAGCCGcuGAGC-GC--UUUG- -5'
24861 3' -51.2 NC_005284.1 + 30424 0.68 0.829178
Target:  5'- cGUGCGCGA--CGGCGAggugcuguUUCGCGAGu- -3'
miRNA:   3'- -CGUGUGCUuaGCCGCU--------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 50247 0.68 0.819845
Target:  5'- -gACGCGAA-CGGCGACgc-UGAAGCg -3'
miRNA:   3'- cgUGUGCUUaGCCGCUGagcGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 3478 0.68 0.819845
Target:  5'- aGCACACGA--CGGCuacGGCUgCGCaGGACg -3'
miRNA:   3'- -CGUGUGCUuaGCCG---CUGA-GCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 15302 0.68 0.819845
Target:  5'- cCGCACGAugugCGggcgcaGCGGCaUCGCGAAAUg -3'
miRNA:   3'- cGUGUGCUua--GC------CGCUG-AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45792 0.68 0.819845
Target:  5'- uGCGCAgGcGUCGGCauGCUCgGCGAAGg -3'
miRNA:   3'- -CGUGUgCuUAGCCGc-UGAG-CGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 49259 0.68 0.819845
Target:  5'- cCGCGCGAucaggaGGCGACgUGaCGAAGCg -3'
miRNA:   3'- cGUGUGCUuag---CCGCUGaGC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 36742 0.68 0.8189
Target:  5'- cCAC-CGGAUCGGCGucgaagcGCUCgGCGAGc- -3'
miRNA:   3'- cGUGuGCUUAGCCGC-------UGAG-CGCUUug -5'
24861 3' -51.2 NC_005284.1 + 41956 0.68 0.810305
Target:  5'- cGCAgACGAagaGUCcGCGGg-CGCGAAGCg -3'
miRNA:   3'- -CGUgUGCU---UAGcCGCUgaGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 42757 0.69 0.804487
Target:  5'- cCGCGCGAgGUCGGCGAUcaugcugucaaucagUCcGCGGAAa -3'
miRNA:   3'- cGUGUGCU-UAGCCGCUG---------------AG-CGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 43619 0.69 0.800571
Target:  5'- cGCGCGCGg--CGGCcGCggCGCGAGcuGCg -3'
miRNA:   3'- -CGUGUGCuuaGCCGcUGa-GCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 47187 0.69 0.800571
Target:  5'- ---uGCGAuuuGUCGGCGAacgugaCGCGGAACa -3'
miRNA:   3'- cgugUGCU---UAGCCGCUga----GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 10070 0.69 0.790652
Target:  5'- aGCGaGCGGAacgcgCGGCGAC-CGCGAccgcGGCg -3'
miRNA:   3'- -CGUgUGCUUa----GCCGCUGaGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 18000 0.69 0.790652
Target:  5'- gGCGCGCGcagucaAGUCGGuCGACg-GCGAcACg -3'
miRNA:   3'- -CGUGUGC------UUAGCC-GCUGagCGCUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.