miRNA display CGI


Results 61 - 80 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 49096 0.69 0.790652
Target:  5'- cCACguGCGAAUcCGGCGGgucaacCUCGCGAAu- -3'
miRNA:   3'- cGUG--UGCUUA-GCCGCU------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 19133 0.69 0.790652
Target:  5'- cGCGCGCGAA-CGGCa--UCGUGAaccuGACg -3'
miRNA:   3'- -CGUGUGCUUaGCCGcugAGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 33157 0.69 0.780562
Target:  5'- cGCACGCugcUCGGCGuCgagCGCGgcGCg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCuGa--GCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 9552 0.69 0.780562
Target:  5'- aGCaACACGAggCGGCGcaggcagcGCUCGCcaAAGCg -3'
miRNA:   3'- -CG-UGUGCUuaGCCGC--------UGAGCGc-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 10623 0.69 0.780562
Target:  5'- cCGCuuCGuGUCGGCGACgagcggCGgCGAAGCg -3'
miRNA:   3'- cGUGu-GCuUAGCCGCUGa-----GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 40175 0.69 0.780562
Target:  5'- aGCGCGCGAGcguUCGGCGccggaacacuUUCGCGccGACg -3'
miRNA:   3'- -CGUGUGCUU---AGCCGCu---------GAGCGCu-UUG- -5'
24861 3' -51.2 NC_005284.1 + 23280 0.69 0.768241
Target:  5'- gGCGCGCGGugccgauAUCGGCGugUaucccggcgucguCGaCGGAACu -3'
miRNA:   3'- -CGUGUGCU-------UAGCCGCugA-------------GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45649 0.69 0.75991
Target:  5'- gGCugGCGGcucGUCGGUG---CGCGAGGCg -3'
miRNA:   3'- -CGugUGCU---UAGCCGCugaGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11240 0.7 0.749373
Target:  5'- -aGCACGuguGUCGaccaacgcggcaGCGGCUCGCGcgGCg -3'
miRNA:   3'- cgUGUGCu--UAGC------------CGCUGAGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 48172 0.7 0.745123
Target:  5'- cGCugGCGAAgugacgcccguugCGGUGacaGCUCGCGcAGCg -3'
miRNA:   3'- -CGugUGCUUa------------GCCGC---UGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 34857 0.7 0.738712
Target:  5'- gGCGCACGAuugggAUCGGCucGACaUCGCcguaGAACa -3'
miRNA:   3'- -CGUGUGCU-----UAGCCG--CUG-AGCGc---UUUG- -5'
24861 3' -51.2 NC_005284.1 + 18682 0.7 0.738712
Target:  5'- cGCACGcCGAAUC-GCGACgaCGCGAc-- -3'
miRNA:   3'- -CGUGU-GCUUAGcCGCUGa-GCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 17489 0.7 0.727939
Target:  5'- gGCGC-CGggUCGGUGG-UCGCGucGGCc -3'
miRNA:   3'- -CGUGuGCuuAGCCGCUgAGCGCu-UUG- -5'
24861 3' -51.2 NC_005284.1 + 31356 0.71 0.695069
Target:  5'- aCACGCGcuGUCGGUGGC-CGUGGAuuGCa -3'
miRNA:   3'- cGUGUGCu-UAGCCGCUGaGCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 15837 0.71 0.695069
Target:  5'- cGCGCACGAagGUCGaCGaaguGCUCGCcGAACg -3'
miRNA:   3'- -CGUGUGCU--UAGCcGC----UGAGCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 21303 0.71 0.672818
Target:  5'- aGCACaacgGCGAggCgguucaaugcgGGCGACUgGCGggGCg -3'
miRNA:   3'- -CGUG----UGCUuaG-----------CCGCUGAgCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 14621 0.71 0.672818
Target:  5'- aCGCACG---UGGCGGUUCGCGAGAUa -3'
miRNA:   3'- cGUGUGCuuaGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 22563 0.71 0.661626
Target:  5'- uGCGCAuCGAagaagagcuAUCGGCGGCgcacauucgucUCGCGAAuGCg -3'
miRNA:   3'- -CGUGU-GCU---------UAGCCGCUG-----------AGCGCUU-UG- -5'
24861 3' -51.2 NC_005284.1 + 11477 0.71 0.661626
Target:  5'- --uCGCGAucagcaGGCGAUUCGCGGGAUg -3'
miRNA:   3'- cguGUGCUuag---CCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 6836 0.71 0.661626
Target:  5'- cGCAC-CGAGUUGGCG-CgCGCGAu-- -3'
miRNA:   3'- -CGUGuGCUUAGCCGCuGaGCGCUuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.