miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 185 0.78 0.310471
Target:  5'- cGgACugGAuuGUCGGCGAggCGCGggGCa -3'
miRNA:   3'- -CgUGugCU--UAGCCGCUgaGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 371 0.66 0.927292
Target:  5'- uGCGCAUGuuGAUCGcaguGCGACuuaccauUCGCGAcgAGCg -3'
miRNA:   3'- -CGUGUGC--UUAGC----CGCUG-------AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 1222 0.67 0.88031
Target:  5'- cGCACGCccccagugCGGaCGACg-GCGAAACa -3'
miRNA:   3'- -CGUGUGcuua----GCC-GCUGagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 2488 0.68 0.847187
Target:  5'- cCAgACGGAaCGcGUGuuCUCGCGAAGCa -3'
miRNA:   3'- cGUgUGCUUaGC-CGCu-GAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 3478 0.68 0.819845
Target:  5'- aGCACACGA--CGGCuacGGCUgCGCaGGACg -3'
miRNA:   3'- -CGUGUGCUuaGCCG---CUGA-GCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 4265 0.74 0.475054
Target:  5'- cGCAagaGCGg--CGGCGACUCGCacccGGAGCa -3'
miRNA:   3'- -CGUg--UGCuuaGCCGCUGAGCG----CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 4350 0.67 0.88031
Target:  5'- cCGCcgGCGAGaaGGCG-CUCGCuGAAGCa -3'
miRNA:   3'- cGUG--UGCUUagCCGCuGAGCG-CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 6836 0.71 0.661626
Target:  5'- cGCAC-CGAGUUGGCG-CgCGCGAu-- -3'
miRNA:   3'- -CGUGuGCUUAGCCGCuGaGCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 6998 0.66 0.915702
Target:  5'- cGCGCuCGAcaUGGCG-CUCGCcGGGCu -3'
miRNA:   3'- -CGUGuGCUuaGCCGCuGAGCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 7260 0.68 0.838295
Target:  5'- aGCGCACG-GUCGGCacCUCGaCGccGAACa -3'
miRNA:   3'- -CGUGUGCuUAGCCGcuGAGC-GC--UUUG- -5'
24861 3' -51.2 NC_005284.1 + 7497 0.66 0.915702
Target:  5'- cGCGCGCGuugaucacgCGGCGACggcCGuCGAucACg -3'
miRNA:   3'- -CGUGUGCuua------GCCGCUGa--GC-GCUu-UG- -5'
24861 3' -51.2 NC_005284.1 + 7890 0.72 0.604336
Target:  5'- aGUGCGCGAgccgacgGUCGGCGAC-CGCauguucuggaucGAAGCg -3'
miRNA:   3'- -CGUGUGCU-------UAGCCGCUGaGCG------------CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 8560 0.66 0.927292
Target:  5'- cGCAucccaccCGCG-GUCGGCcaguucucccacGACUCGgGAGGCu -3'
miRNA:   3'- -CGU-------GUGCuUAGCCG------------CUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 8894 0.66 0.902385
Target:  5'- cGCGCGCGAcacaCGGCaaccGCUCGaCGcGACa -3'
miRNA:   3'- -CGUGUGCUua--GCCGc---UGAGC-GCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 9240 0.72 0.605457
Target:  5'- aCGCGCcAcgCGGCGGCauagagCGCGGAGCa -3'
miRNA:   3'- cGUGUGcUuaGCCGCUGa-----GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9336 0.66 0.895302
Target:  5'- aGUAUaucgGCGAGUCGgaucaaGCGACgggcgcgagCGCGAGGCu -3'
miRNA:   3'- -CGUG----UGCUUAGC------CGCUGa--------GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9419 0.67 0.887942
Target:  5'- gGCAuCGUGAAacUCGGCGugucGCUCGCGGccgGGCg -3'
miRNA:   3'- -CGU-GUGCUU--AGCCGC----UGAGCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 9495 0.67 0.88031
Target:  5'- cGCAgGCGGcgacagcguggGUCGGCGcccggcgagcGCUCGUcgagGAGACg -3'
miRNA:   3'- -CGUgUGCU-----------UAGCCGC----------UGAGCG----CUUUG- -5'
24861 3' -51.2 NC_005284.1 + 9552 0.69 0.780562
Target:  5'- aGCaACACGAggCGGCGcaggcagcGCUCGCcaAAGCg -3'
miRNA:   3'- -CG-UGUGCUuaGCCGC--------UGAGCGc-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 9845 0.78 0.318382
Target:  5'- gGCACGCccuacgCGGCGaucaucGCUCGCGAGACg -3'
miRNA:   3'- -CGUGUGcuua--GCCGC------UGAGCGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.