miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 9903 0.66 0.915702
Target:  5'- aGCGCGcCGAagcGUCGcucGCG-CUCGCGcAGCa -3'
miRNA:   3'- -CGUGU-GCU---UAGC---CGCuGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 9939 0.66 0.927873
Target:  5'- gGCGUACGGcgCuugaGGCGGCa-GCGAAGCa -3'
miRNA:   3'- -CGUGUGCUuaG----CCGCUGagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 10070 0.69 0.790652
Target:  5'- aGCGaGCGGAacgcgCGGCGAC-CGCGAccgcGGCg -3'
miRNA:   3'- -CGUgUGCUUa----GCCGCUGaGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 10193 0.72 0.639168
Target:  5'- uGCugGCGGcgGUCGGCGGCUuacCGgGAAu- -3'
miRNA:   3'- -CGugUGCU--UAGCCGCUGA---GCgCUUug -5'
24861 3' -51.2 NC_005284.1 + 10391 0.68 0.847187
Target:  5'- uGCGCACGAAgcaagaGGCG--UCGCGGGc- -3'
miRNA:   3'- -CGUGUGCUUag----CCGCugAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 10623 0.69 0.780562
Target:  5'- cCGCuuCGuGUCGGCGACgagcggCGgCGAAGCg -3'
miRNA:   3'- cGUGu-GCuUAGCCGCUGa-----GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11043 0.68 0.847187
Target:  5'- gGCuuGCGAGUCgcaaaGGCuGACU-GCGAGGCa -3'
miRNA:   3'- -CGugUGCUUAG-----CCG-CUGAgCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11068 0.66 0.909186
Target:  5'- cGCugAUGAAUCaGCaGAUgguggUCGCGAAGg -3'
miRNA:   3'- -CGugUGCUUAGcCG-CUG-----AGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 11240 0.7 0.749373
Target:  5'- -aGCACGuguGUCGaccaacgcggcaGCGGCUCGCGcgGCg -3'
miRNA:   3'- cgUGUGCu--UAGC------------CGCUGAGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 11477 0.71 0.661626
Target:  5'- --uCGCGAucagcaGGCGAUUCGCGGGAUg -3'
miRNA:   3'- cguGUGCUuag---CCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11586 0.78 0.318382
Target:  5'- -gACGCGGAgcUCGGCGACUaCGCGGccgAGCg -3'
miRNA:   3'- cgUGUGCUU--AGCCGCUGA-GCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 11822 0.78 0.301943
Target:  5'- cGCGCGCGAGcgCGGCuaucucgagcagcGGCUCGCGuuGCa -3'
miRNA:   3'- -CGUGUGCUUa-GCCG-------------CUGAGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 13385 0.66 0.902385
Target:  5'- aUACAUGcGUCaguaGCcACUCGCGAAACa -3'
miRNA:   3'- cGUGUGCuUAGc---CGcUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 14535 0.66 0.921932
Target:  5'- aCGCuGCGggUgGGCGACaUCaaCGGAACg -3'
miRNA:   3'- cGUG-UGCuuAgCCGCUG-AGc-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 14621 0.71 0.672818
Target:  5'- aCGCACG---UGGCGGUUCGCGAGAUa -3'
miRNA:   3'- cGUGUGCuuaGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 14966 0.72 0.594255
Target:  5'- cGCGCGCcguUCGGCGGCUuccugUGCGAcACg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCUGA-----GCGCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 15302 0.68 0.819845
Target:  5'- cCGCACGAugugCGggcgcaGCGGCaUCGCGAAAUg -3'
miRNA:   3'- cGUGUGCUua--GC------CGCUG-AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 15837 0.71 0.695069
Target:  5'- cGCGCACGAagGUCGaCGaaguGCUCGCcGAACg -3'
miRNA:   3'- -CGUGUGCU--UAGCcGC----UGAGCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 16996 0.66 0.902385
Target:  5'- cGCGCACa---CGGCGACgaUCGcCGAcGCg -3'
miRNA:   3'- -CGUGUGcuuaGCCGCUG--AGC-GCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 17489 0.7 0.727939
Target:  5'- gGCGC-CGggUCGGUGG-UCGCGucGGCc -3'
miRNA:   3'- -CGUGuGCuuAGCCGCUgAGCGCu-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.