miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 17884 0.66 0.895302
Target:  5'- cCGC-CGGAUCGGCGgGCgcaucCGCGcAGCg -3'
miRNA:   3'- cGUGuGCUUAGCCGC-UGa----GCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 18000 0.69 0.790652
Target:  5'- gGCGCGCGcagucaAGUCGGuCGACg-GCGAcACg -3'
miRNA:   3'- -CGUGUGC------UUAGCC-GCUGagCGCUuUG- -5'
24861 3' -51.2 NC_005284.1 + 18682 0.7 0.738712
Target:  5'- cGCACGcCGAAUC-GCGACgaCGCGAc-- -3'
miRNA:   3'- -CGUGU-GCUUAGcCGCUGa-GCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 18791 0.67 0.887942
Target:  5'- cGUGCgAUGAGUCGGaucgGAUcacgcugauuguUCGCGAAGCg -3'
miRNA:   3'- -CGUG-UGCUUAGCCg---CUG------------AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 19133 0.69 0.790652
Target:  5'- cGCGCGCGAA-CGGCa--UCGUGAaccuGACg -3'
miRNA:   3'- -CGUGUGCUUaGCCGcugAGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 19497 0.66 0.897456
Target:  5'- -aACGCGAugAUCGGCaacuauauccaguccGACaacuacaUCGCGggGCg -3'
miRNA:   3'- cgUGUGCU--UAGCCG---------------CUG-------AGCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 19979 0.66 0.902385
Target:  5'- -gAUAUG-AUCGGCGAC-CGCGccuauGACg -3'
miRNA:   3'- cgUGUGCuUAGCCGCUGaGCGCu----UUG- -5'
24861 3' -51.2 NC_005284.1 + 21165 0.67 0.887942
Target:  5'- cGCGCGCGGcUCGaGCaacGGCUcaucgagcaCGCGGAGCc -3'
miRNA:   3'- -CGUGUGCUuAGC-CG---CUGA---------GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 21303 0.71 0.672818
Target:  5'- aGCACaacgGCGAggCgguucaaugcgGGCGACUgGCGggGCg -3'
miRNA:   3'- -CGUG----UGCUuaG-----------CCGCUGAgCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 22563 0.71 0.661626
Target:  5'- uGCGCAuCGAagaagagcuAUCGGCGGCgcacauucgucUCGCGAAuGCg -3'
miRNA:   3'- -CGUGU-GCU---------UAGCCGCUG-----------AGCGCUU-UG- -5'
24861 3' -51.2 NC_005284.1 + 22854 0.66 0.909186
Target:  5'- aGUACACGAua-GGCGGCgggaagggCGUcGAGCg -3'
miRNA:   3'- -CGUGUGCUuagCCGCUGa-------GCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 23280 0.69 0.768241
Target:  5'- gGCGCGCGGugccgauAUCGGCGugUaucccggcgucguCGaCGGAACu -3'
miRNA:   3'- -CGUGUGCU-------UAGCCGCugA-------------GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 23568 0.68 0.838295
Target:  5'- aGCGCAuCGGcaacgucgCGGCGAUgcuaCGCGAGAUc -3'
miRNA:   3'- -CGUGU-GCUua------GCCGCUGa---GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 24341 1.13 0.001469
Target:  5'- aGCACACGAAUCGGCGACUCGCGAAACa -3'
miRNA:   3'- -CGUGUGCUUAGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 28138 0.66 0.921932
Target:  5'- cCGCACGG--UGGCGGgcuucCUCGCGAu-- -3'
miRNA:   3'- cGUGUGCUuaGCCGCU-----GAGCGCUuug -5'
24861 3' -51.2 NC_005284.1 + 29107 0.66 0.902385
Target:  5'- uGCACGCaga--GGCuuGGCUCGCGcGAACg -3'
miRNA:   3'- -CGUGUGcuuagCCG--CUGAGCGC-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 29265 0.66 0.915702
Target:  5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3'
miRNA:   3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5'
24861 3' -51.2 NC_005284.1 + 29847 0.72 0.616683
Target:  5'- aGCGCAUG-AUCGGCGACggaGgGAucuGCg -3'
miRNA:   3'- -CGUGUGCuUAGCCGCUGag-CgCUu--UG- -5'
24861 3' -51.2 NC_005284.1 + 30264 0.66 0.909186
Target:  5'- cGgGCGCGuucguucgcuGUCGaGUGGCUCGCGcGAUa -3'
miRNA:   3'- -CgUGUGCu---------UAGC-CGCUGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 30424 0.68 0.829178
Target:  5'- cGUGCGCGA--CGGCGAggugcuguUUCGCGAGu- -3'
miRNA:   3'- -CGUGUGCUuaGCCGCU--------GAGCGCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.