miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 50247 0.68 0.819845
Target:  5'- -gACGCGAA-CGGCGACgc-UGAAGCg -3'
miRNA:   3'- cgUGUGCUUaGCCGCUGagcGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 49259 0.68 0.819845
Target:  5'- cCGCGCGAucaggaGGCGACgUGaCGAAGCg -3'
miRNA:   3'- cGUGUGCUuag---CCGCUGaGC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 49096 0.69 0.790652
Target:  5'- cCACguGCGAAUcCGGCGGgucaacCUCGCGAAu- -3'
miRNA:   3'- cGUG--UGCUUA-GCCGCU------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 48718 0.66 0.909186
Target:  5'- cCGCuCGGAaguUCGGUGacGCUCGCGGAc- -3'
miRNA:   3'- cGUGuGCUU---AGCCGC--UGAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 48172 0.7 0.745123
Target:  5'- cGCugGCGAAgugacgcccguugCGGUGacaGCUCGCGcAGCg -3'
miRNA:   3'- -CGugUGCUUa------------GCCGC---UGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 47942 0.67 0.887942
Target:  5'- aGCACACGAucgAUCGcGCGcgccaACUCgguGCGAAu- -3'
miRNA:   3'- -CGUGUGCU---UAGC-CGC-----UGAG---CGCUUug -5'
24861 3' -51.2 NC_005284.1 + 47775 0.73 0.560884
Target:  5'- aGCAgAuCGAggCGGCG-CUCGCGGAGg -3'
miRNA:   3'- -CGUgU-GCUuaGCCGCuGAGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 47187 0.69 0.800571
Target:  5'- ---uGCGAuuuGUCGGCGAacgugaCGCGGAACa -3'
miRNA:   3'- cgugUGCU---UAGCCGCUga----GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 46637 0.67 0.872411
Target:  5'- uGCGgACGuagUGGCGACaCGCGGcaaGACg -3'
miRNA:   3'- -CGUgUGCuuaGCCGCUGaGCGCU---UUG- -5'
24861 3' -51.2 NC_005284.1 + 46027 0.66 0.902385
Target:  5'- uGCACGcCGAAcgccgcugCGGCGGCuugugcguauUCGCGGAu- -3'
miRNA:   3'- -CGUGU-GCUUa-------GCCGCUG----------AGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 45911 0.67 0.887942
Target:  5'- cGCGCGCGAugcgcagcacGUCGuucuGCGcaaUCGCGAAAUc -3'
miRNA:   3'- -CGUGUGCU----------UAGC----CGCug-AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45792 0.68 0.819845
Target:  5'- uGCGCAgGcGUCGGCauGCUCgGCGAAGg -3'
miRNA:   3'- -CGUGUgCuUAGCCGc-UGAG-CGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 45649 0.69 0.75991
Target:  5'- gGCugGCGGcucGUCGGUG---CGCGAGGCg -3'
miRNA:   3'- -CGugUGCU---UAGCCGCugaGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45558 0.67 0.88031
Target:  5'- cCGCGCGcGUCaGCGcCUCGaCGAGAUu -3'
miRNA:   3'- cGUGUGCuUAGcCGCuGAGC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45445 0.67 0.871607
Target:  5'- gGCGuCGCGAuuGUCgGGCGACcaguugcUCGCGGcaauGACa -3'
miRNA:   3'- -CGU-GUGCU--UAG-CCGCUG-------AGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 45068 0.68 0.847187
Target:  5'- gGCGgGCGAGcgCGGCuacgcGCUCGUGAAGu -3'
miRNA:   3'- -CGUgUGCUUa-GCCGc----UGAGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 44413 0.67 0.864253
Target:  5'- aCGCGCGAuuacugccucGUUGGCGACuagauUCGCGuGAUc -3'
miRNA:   3'- cGUGUGCU----------UAGCCGCUG-----AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 43619 0.69 0.800571
Target:  5'- cGCGCGCGg--CGGCcGCggCGCGAGcuGCg -3'
miRNA:   3'- -CGUGUGCuuaGCCGcUGa-GCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 42824 0.66 0.908518
Target:  5'- -gACACGAGugcauccUCGGCa--UUGCGGAACg -3'
miRNA:   3'- cgUGUGCUU-------AGCCGcugAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 42757 0.69 0.804487
Target:  5'- cCGCGCGAgGUCGGCGAUcaugcugucaaucagUCcGCGGAAa -3'
miRNA:   3'- cGUGUGCU-UAGCCGCUG---------------AG-CGCUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.