miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 42418 0.67 0.872411
Target:  5'- cGCGCucccgccaACGAGcccacccgCGGCGAaucgCGCGAAGCc -3'
miRNA:   3'- -CGUG--------UGCUUa-------GCCGCUga--GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 41956 0.68 0.810305
Target:  5'- cGCAgACGAagaGUCcGCGGg-CGCGAAGCg -3'
miRNA:   3'- -CGUgUGCU---UAGcCGCUgaGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 41801 0.66 0.902385
Target:  5'- uUAUGCGuccGAUCGGUGGCaUCGUGAuuGGCg -3'
miRNA:   3'- cGUGUGC---UUAGCCGCUG-AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 41006 0.72 0.627924
Target:  5'- -uGCugGAA-CGGCGAUcgUCGCGGAGg -3'
miRNA:   3'- cgUGugCUUaGCCGCUG--AGCGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 40757 0.67 0.88031
Target:  5'- uGCAUGCGAuuUUGGcCGACUgUGuCGAGGCa -3'
miRNA:   3'- -CGUGUGCUu-AGCC-GCUGA-GC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 40175 0.69 0.780562
Target:  5'- aGCGCGCGAGcguUCGGCGccggaacacuUUCGCGccGACg -3'
miRNA:   3'- -CGUGUGCUU---AGCCGCu---------GAGCGCu-UUG- -5'
24861 3' -51.2 NC_005284.1 + 39355 0.66 0.920709
Target:  5'- uGCACgccauggACGAAcUGGCGGCcgacuagUCGCGcGACg -3'
miRNA:   3'- -CGUG-------UGCUUaGCCGCUG-------AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 36742 0.68 0.8189
Target:  5'- cCAC-CGGAUCGGCGucgaagcGCUCgGCGAGc- -3'
miRNA:   3'- cGUGuGCUUAGCCGC-------UGAG-CGCUUug -5'
24861 3' -51.2 NC_005284.1 + 34857 0.7 0.738712
Target:  5'- gGCGCACGAuugggAUCGGCucGACaUCGCcguaGAACa -3'
miRNA:   3'- -CGUGUGCU-----UAGCCG--CUG-AGCGc---UUUG- -5'
24861 3' -51.2 NC_005284.1 + 34042 0.67 0.864253
Target:  5'- aGCGCAaGGAUCGucgcuggcuucGCGGCUCG-GAAAUa -3'
miRNA:   3'- -CGUGUgCUUAGC-----------CGCUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 33157 0.69 0.780562
Target:  5'- cGCACGCugcUCGGCGuCgagCGCGgcGCg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCuGa--GCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 33126 0.66 0.915702
Target:  5'- cCGC-CGAcgCGGCGGCaUCGUGcgcGGCg -3'
miRNA:   3'- cGUGuGCUuaGCCGCUG-AGCGCu--UUG- -5'
24861 3' -51.2 NC_005284.1 + 31356 0.71 0.695069
Target:  5'- aCACGCGcuGUCGGUGGC-CGUGGAuuGCa -3'
miRNA:   3'- cGUGUGCu-UAGCCGCUGaGCGCUU--UG- -5'
24861 3' -51.2 NC_005284.1 + 31268 0.72 0.605457
Target:  5'- uUugGCGuGUCGGCGAuCagGCGGAACa -3'
miRNA:   3'- cGugUGCuUAGCCGCU-GagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 30424 0.68 0.829178
Target:  5'- cGUGCGCGA--CGGCGAggugcuguUUCGCGAGu- -3'
miRNA:   3'- -CGUGUGCUuaGCCGCU--------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 30264 0.66 0.909186
Target:  5'- cGgGCGCGuucguucgcuGUCGaGUGGCUCGCGcGAUa -3'
miRNA:   3'- -CgUGUGCu---------UAGC-CGCUGAGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 29847 0.72 0.616683
Target:  5'- aGCGCAUG-AUCGGCGACggaGgGAucuGCg -3'
miRNA:   3'- -CGUGUGCuUAGCCGCUGag-CgCUu--UG- -5'
24861 3' -51.2 NC_005284.1 + 29265 0.66 0.915702
Target:  5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3'
miRNA:   3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5'
24861 3' -51.2 NC_005284.1 + 29107 0.66 0.902385
Target:  5'- uGCACGCaga--GGCuuGGCUCGCGcGAACg -3'
miRNA:   3'- -CGUGUGcuuagCCG--CUGAGCGC-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 28138 0.66 0.921932
Target:  5'- cCGCACGG--UGGCGGgcuucCUCGCGAu-- -3'
miRNA:   3'- cGUGUGCUuaGCCGCU-----GAGCGCUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.