Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24861 | 3' | -51.2 | NC_005284.1 | + | 11586 | 0.78 | 0.318382 |
Target: 5'- -gACGCGGAgcUCGGCGACUaCGCGGccgAGCg -3' miRNA: 3'- cgUGUGCUU--AGCCGCUGA-GCGCU---UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 9845 | 0.78 | 0.318382 |
Target: 5'- gGCACGCccuacgCGGCGaucaucGCUCGCGAGACg -3' miRNA: 3'- -CGUGUGcuua--GCCGC------UGAGCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 185 | 0.78 | 0.310471 |
Target: 5'- cGgACugGAuuGUCGGCGAggCGCGggGCa -3' miRNA: 3'- -CgUGugCU--UAGCCGCUgaGCGCuuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 11822 | 0.78 | 0.301943 |
Target: 5'- cGCGCGCGAGcgCGGCuaucucgagcagcGGCUCGCGuuGCa -3' miRNA: 3'- -CGUGUGCUUa-GCCG-------------CUGAGCGCuuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 22563 | 0.71 | 0.661626 |
Target: 5'- uGCGCAuCGAagaagagcuAUCGGCGGCgcacauucgucUCGCGAAuGCg -3' miRNA: 3'- -CGUGU-GCU---------UAGCCGCUG-----------AGCGCUU-UG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 21303 | 0.71 | 0.672818 |
Target: 5'- aGCACaacgGCGAggCgguucaaugcgGGCGACUgGCGggGCg -3' miRNA: 3'- -CGUG----UGCUuaG-----------CCGCUGAgCGCuuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 3478 | 0.68 | 0.819845 |
Target: 5'- aGCACACGA--CGGCuacGGCUgCGCaGGACg -3' miRNA: 3'- -CGUGUGCUuaGCCG---CUGA-GCGcUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 18000 | 0.69 | 0.790652 |
Target: 5'- gGCGCGCGcagucaAGUCGGuCGACg-GCGAcACg -3' miRNA: 3'- -CGUGUGC------UUAGCC-GCUGagCGCUuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 10070 | 0.69 | 0.790652 |
Target: 5'- aGCGaGCGGAacgcgCGGCGAC-CGCGAccgcGGCg -3' miRNA: 3'- -CGUgUGCUUa----GCCGCUGaGCGCU----UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 10623 | 0.69 | 0.780562 |
Target: 5'- cCGCuuCGuGUCGGCGACgagcggCGgCGAAGCg -3' miRNA: 3'- cGUGu-GCuUAGCCGCUGa-----GC-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 9552 | 0.69 | 0.780562 |
Target: 5'- aGCaACACGAggCGGCGcaggcagcGCUCGCcaAAGCg -3' miRNA: 3'- -CG-UGUGCUuaGCCGC--------UGAGCGc-UUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 23280 | 0.69 | 0.768241 |
Target: 5'- gGCGCGCGGugccgauAUCGGCGugUaucccggcgucguCGaCGGAACu -3' miRNA: 3'- -CGUGUGCU-------UAGCCGCugA-------------GC-GCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 45649 | 0.69 | 0.75991 |
Target: 5'- gGCugGCGGcucGUCGGUG---CGCGAGGCg -3' miRNA: 3'- -CGugUGCU---UAGCCGCugaGCGCUUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 11240 | 0.7 | 0.749373 |
Target: 5'- -aGCACGuguGUCGaccaacgcggcaGCGGCUCGCGcgGCg -3' miRNA: 3'- cgUGUGCu--UAGC------------CGCUGAGCGCuuUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 48172 | 0.7 | 0.745123 |
Target: 5'- cGCugGCGAAgugacgcccguugCGGUGacaGCUCGCGcAGCg -3' miRNA: 3'- -CGugUGCUUa------------GCCGC---UGAGCGCuUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 18682 | 0.7 | 0.738712 |
Target: 5'- cGCACGcCGAAUC-GCGACgaCGCGAc-- -3' miRNA: 3'- -CGUGU-GCUUAGcCGCUGa-GCGCUuug -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 34857 | 0.7 | 0.738712 |
Target: 5'- gGCGCACGAuugggAUCGGCucGACaUCGCcguaGAACa -3' miRNA: 3'- -CGUGUGCU-----UAGCCG--CUG-AGCGc---UUUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 17489 | 0.7 | 0.727939 |
Target: 5'- gGCGC-CGggUCGGUGG-UCGCGucGGCc -3' miRNA: 3'- -CGUGuGCuuAGCCGCUgAGCGCu-UUG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 31356 | 0.71 | 0.695069 |
Target: 5'- aCACGCGcuGUCGGUGGC-CGUGGAuuGCa -3' miRNA: 3'- cGUGUGCu-UAGCCGCUGaGCGCUU--UG- -5' |
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24861 | 3' | -51.2 | NC_005284.1 | + | 24341 | 1.13 | 0.001469 |
Target: 5'- aGCACACGAAUCGGCGACUCGCGAAACa -3' miRNA: 3'- -CGUGUGCUUAGCCGCUGAGCGCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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