miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 8560 0.66 0.927292
Target:  5'- cGCAucccaccCGCG-GUCGGCcaguucucccacGACUCGgGAGGCu -3'
miRNA:   3'- -CGU-------GUGCuUAGCCG------------CUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 42418 0.67 0.872411
Target:  5'- cGCGCucccgccaACGAGcccacccgCGGCGAaucgCGCGAAGCc -3'
miRNA:   3'- -CGUG--------UGCUUa-------GCCGCUga--GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 23568 0.68 0.838295
Target:  5'- aGCGCAuCGGcaacgucgCGGCGAUgcuaCGCGAGAUc -3'
miRNA:   3'- -CGUGU-GCUua------GCCGCUGa---GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 24341 1.13 0.001469
Target:  5'- aGCACACGAAUCGGCGACUCGCGAAACa -3'
miRNA:   3'- -CGUGUGCUUAGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 29265 0.66 0.915702
Target:  5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3'
miRNA:   3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5'
24861 3' -51.2 NC_005284.1 + 7497 0.66 0.915702
Target:  5'- cGCGCGCGuugaucacgCGGCGACggcCGuCGAucACg -3'
miRNA:   3'- -CGUGUGCuua------GCCGCUGa--GC-GCUu-UG- -5'
24861 3' -51.2 NC_005284.1 + 42824 0.66 0.908518
Target:  5'- -gACACGAGugcauccUCGGCa--UUGCGGAACg -3'
miRNA:   3'- cgUGUGCUU-------AGCCGcugAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 13385 0.66 0.902385
Target:  5'- aUACAUGcGUCaguaGCcACUCGCGAAACa -3'
miRNA:   3'- cGUGUGCuUAGc---CGcUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 29107 0.66 0.902385
Target:  5'- uGCACGCaga--GGCuuGGCUCGCGcGAACg -3'
miRNA:   3'- -CGUGUGcuuagCCG--CUGAGCGC-UUUG- -5'
24861 3' -51.2 NC_005284.1 + 1222 0.67 0.88031
Target:  5'- cGCACGCccccagugCGGaCGACg-GCGAAACa -3'
miRNA:   3'- -CGUGUGcuua----GCC-GCUGagCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 18791 0.67 0.887942
Target:  5'- cGUGCgAUGAGUCGGaucgGAUcacgcugauuguUCGCGAAGCg -3'
miRNA:   3'- -CGUG-UGCUUAGCCg---CUG------------AGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 19979 0.66 0.902385
Target:  5'- -gAUAUG-AUCGGCGAC-CGCGccuauGACg -3'
miRNA:   3'- cgUGUGCuUAGCCGCUGaGCGCu----UUG- -5'
24861 3' -51.2 NC_005284.1 + 371 0.66 0.927292
Target:  5'- uGCGCAUGuuGAUCGcaguGCGACuuaccauUCGCGAcgAGCg -3'
miRNA:   3'- -CGUGUGC--UUAGC----CGCUG-------AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 47942 0.67 0.887942
Target:  5'- aGCACACGAucgAUCGcGCGcgccaACUCgguGCGAAu- -3'
miRNA:   3'- -CGUGUGCU---UAGC-CGC-----UGAG---CGCUUug -5'
24861 3' -51.2 NC_005284.1 + 39355 0.66 0.920709
Target:  5'- uGCACgccauggACGAAcUGGCGGCcgacuagUCGCGcGACg -3'
miRNA:   3'- -CGUG-------UGCUUaGCCGCUG-------AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 46027 0.66 0.902385
Target:  5'- uGCACGcCGAAcgccgcugCGGCGGCuugugcguauUCGCGGAu- -3'
miRNA:   3'- -CGUGU-GCUUa-------GCCGCUG----------AGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 45558 0.67 0.88031
Target:  5'- cCGCGCGcGUCaGCGcCUCGaCGAGAUu -3'
miRNA:   3'- cGUGUGCuUAGcCGCuGAGC-GCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11043 0.68 0.847187
Target:  5'- gGCuuGCGAGUCgcaaaGGCuGACU-GCGAGGCa -3'
miRNA:   3'- -CGugUGCUUAG-----CCG-CUGAgCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 33126 0.66 0.915702
Target:  5'- cCGC-CGAcgCGGCGGCaUCGUGcgcGGCg -3'
miRNA:   3'- cGUGuGCUuaGCCGCUG-AGCGCu--UUG- -5'
24861 3' -51.2 NC_005284.1 + 48718 0.66 0.909186
Target:  5'- cCGCuCGGAaguUCGGUGacGCUCGCGGAc- -3'
miRNA:   3'- cGUGuGCUU---AGCCGC--UGAGCGCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.