miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 3' -51.2 NC_005284.1 + 19979 0.66 0.902385
Target:  5'- -gAUAUG-AUCGGCGAC-CGCGccuauGACg -3'
miRNA:   3'- cgUGUGCuUAGCCGCUGaGCGCu----UUG- -5'
24861 3' -51.2 NC_005284.1 + 33126 0.66 0.915702
Target:  5'- cCGC-CGAcgCGGCGGCaUCGUGcgcGGCg -3'
miRNA:   3'- cGUGuGCUuaGCCGCUG-AGCGCu--UUG- -5'
24861 3' -51.2 NC_005284.1 + 24341 1.13 0.001469
Target:  5'- aGCACACGAAUCGGCGACUCGCGAAACa -3'
miRNA:   3'- -CGUGUGCUUAGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 49096 0.69 0.790652
Target:  5'- cCACguGCGAAUcCGGCGGgucaacCUCGCGAAu- -3'
miRNA:   3'- cGUG--UGCUUA-GCCGCU------GAGCGCUUug -5'
24861 3' -51.2 NC_005284.1 + 42418 0.67 0.872411
Target:  5'- cGCGCucccgccaACGAGcccacccgCGGCGAaucgCGCGAAGCc -3'
miRNA:   3'- -CGUG--------UGCUUa-------GCCGCUga--GCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 39355 0.66 0.920709
Target:  5'- uGCACgccauggACGAAcUGGCGGCcgacuagUCGCGcGACg -3'
miRNA:   3'- -CGUG-------UGCUUaGCCGCUG-------AGCGCuUUG- -5'
24861 3' -51.2 NC_005284.1 + 19133 0.69 0.790652
Target:  5'- cGCGCGCGAA-CGGCa--UCGUGAaccuGACg -3'
miRNA:   3'- -CGUGUGCUUaGCCGcugAGCGCU----UUG- -5'
24861 3' -51.2 NC_005284.1 + 371 0.66 0.927292
Target:  5'- uGCGCAUGuuGAUCGcaguGCGACuuaccauUCGCGAcgAGCg -3'
miRNA:   3'- -CGUGUGC--UUAGC----CGCUG-------AGCGCU--UUG- -5'
24861 3' -51.2 NC_005284.1 + 8560 0.66 0.927292
Target:  5'- cGCAucccaccCGCG-GUCGGCcaguucucccacGACUCGgGAGGCu -3'
miRNA:   3'- -CGU-------GUGCuUAGCCG------------CUGAGCgCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 11043 0.68 0.847187
Target:  5'- gGCuuGCGAGUCgcaaaGGCuGACU-GCGAGGCa -3'
miRNA:   3'- -CGugUGCUUAG-----CCG-CUGAgCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 14621 0.71 0.672818
Target:  5'- aCGCACG---UGGCGGUUCGCGAGAUa -3'
miRNA:   3'- cGUGUGCuuaGCCGCUGAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 42824 0.66 0.908518
Target:  5'- -gACACGAGugcauccUCGGCa--UUGCGGAACg -3'
miRNA:   3'- cgUGUGCUU-------AGCCGcugAGCGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 29265 0.66 0.915702
Target:  5'- cGCGCACGAcgaCGGCcGCUC-CGAu-- -3'
miRNA:   3'- -CGUGUGCUua-GCCGcUGAGcGCUuug -5'
24861 3' -51.2 NC_005284.1 + 42757 0.69 0.804487
Target:  5'- cCGCGCGAgGUCGGCGAUcaugcugucaaucagUCcGCGGAAa -3'
miRNA:   3'- cGUGUGCU-UAGCCGCUG---------------AG-CGCUUUg -5'
24861 3' -51.2 NC_005284.1 + 33157 0.69 0.780562
Target:  5'- cGCACGCugcUCGGCGuCgagCGCGgcGCg -3'
miRNA:   3'- -CGUGUGcuuAGCCGCuGa--GCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 21303 0.71 0.672818
Target:  5'- aGCACaacgGCGAggCgguucaaugcgGGCGACUgGCGggGCg -3'
miRNA:   3'- -CGUG----UGCUuaG-----------CCGCUGAgCGCuuUG- -5'
24861 3' -51.2 NC_005284.1 + 22563 0.71 0.661626
Target:  5'- uGCGCAuCGAagaagagcuAUCGGCGGCgcacauucgucUCGCGAAuGCg -3'
miRNA:   3'- -CGUGU-GCU---------UAGCCGCUG-----------AGCGCUU-UG- -5'
24861 3' -51.2 NC_005284.1 + 50247 0.68 0.819845
Target:  5'- -gACGCGAA-CGGCGACgc-UGAAGCg -3'
miRNA:   3'- cgUGUGCUUaGCCGCUGagcGCUUUG- -5'
24861 3' -51.2 NC_005284.1 + 3478 0.68 0.819845
Target:  5'- aGCACACGA--CGGCuacGGCUgCGCaGGACg -3'
miRNA:   3'- -CGUGUGCUuaGCCG---CUGA-GCGcUUUG- -5'
24861 3' -51.2 NC_005284.1 + 45792 0.68 0.819845
Target:  5'- uGCGCAgGcGUCGGCauGCUCgGCGAAGg -3'
miRNA:   3'- -CGUGUgCuUAGCCGc-UGAG-CGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.