miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 5' -57 NC_005284.1 + 21560 0.66 0.660794
Target:  5'- gCCGaCGaGCaggccGCGCGGGCGuUCGACGc -3'
miRNA:   3'- -GGCaGCgCG-----UGCGCCUGCuAGCUGUa -5'
24861 5' -57 NC_005284.1 + 9484 0.66 0.660794
Target:  5'- -aGUCGCgGCgACGCaGGCGG-CGACAg -3'
miRNA:   3'- ggCAGCG-CG-UGCGcCUGCUaGCUGUa -5'
24861 5' -57 NC_005284.1 + 27788 0.66 0.660794
Target:  5'- aCCgGUCGCGCcCuuuuCGGACGAgUGGCGUg -3'
miRNA:   3'- -GG-CAGCGCGuGc---GCCUGCUaGCUGUA- -5'
24861 5' -57 NC_005284.1 + 22242 0.66 0.660794
Target:  5'- aCGUCGagguGUuCGCGGGCGGggCGGCGc -3'
miRNA:   3'- gGCAGCg---CGuGCGCCUGCUa-GCUGUa -5'
24861 5' -57 NC_005284.1 + 31009 0.66 0.660794
Target:  5'- gCCGcCGUGCGUGCGGAaguugcCGGUUGGCu- -3'
miRNA:   3'- -GGCaGCGCGUGCGCCU------GCUAGCUGua -5'
24861 5' -57 NC_005284.1 + 46201 0.66 0.650064
Target:  5'- ---cCGCGCAUGCGG-CGGUCGuauuCGg -3'
miRNA:   3'- ggcaGCGCGUGCGCCuGCUAGCu---GUa -5'
24861 5' -57 NC_005284.1 + 18063 0.66 0.639318
Target:  5'- uCCGguggCGgGCGCuguGUGGAUGAUCGAa-- -3'
miRNA:   3'- -GGCa---GCgCGUG---CGCCUGCUAGCUgua -5'
24861 5' -57 NC_005284.1 + 45554 0.66 0.628566
Target:  5'- cCCGcCGCGCGCGUcaGCGccUCGACGa -3'
miRNA:   3'- -GGCaGCGCGUGCGccUGCu-AGCUGUa -5'
24861 5' -57 NC_005284.1 + 7885 0.66 0.628566
Target:  5'- --aUCGCaGUGCGCGagccGACGGUCGGCGa -3'
miRNA:   3'- ggcAGCG-CGUGCGC----CUGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 25580 0.66 0.628566
Target:  5'- gCCGUC-CGCGCgGCGGuugcCGAcuguuUCGACGa -3'
miRNA:   3'- -GGCAGcGCGUG-CGCCu---GCU-----AGCUGUa -5'
24861 5' -57 NC_005284.1 + 42747 0.66 0.628566
Target:  5'- uCCGcCGCGaucauUACGUGGGCGAUugCGACc- -3'
miRNA:   3'- -GGCaGCGC-----GUGCGCCUGCUA--GCUGua -5'
24861 5' -57 NC_005284.1 + 8047 0.67 0.60708
Target:  5'- gUGUCGUGUucggugaaACGcCGGAUGGUUGGCGg -3'
miRNA:   3'- gGCAGCGCG--------UGC-GCCUGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 15728 0.67 0.603863
Target:  5'- uCUGUCGaCGCGCGCGguguggggcggaauGugGGcCGACAg -3'
miRNA:   3'- -GGCAGC-GCGUGCGC--------------CugCUaGCUGUa -5'
24861 5' -57 NC_005284.1 + 9215 0.67 0.583543
Target:  5'- gCGUCGauagccgaGUGCGCGGGCGAcgcgccacgcggCGGCAUa -3'
miRNA:   3'- gGCAGCg-------CGUGCGCCUGCUa-----------GCUGUA- -5'
24861 5' -57 NC_005284.1 + 46349 0.67 0.575026
Target:  5'- gCCGUCGCGgGCucgcCGGACcaucUCGGCAUc -3'
miRNA:   3'- -GGCAGCGCgUGc---GCCUGcu--AGCUGUA- -5'
24861 5' -57 NC_005284.1 + 10186 0.68 0.532945
Target:  5'- uCCGgCuuGCugGCGG-CGGUCGGCGg -3'
miRNA:   3'- -GGCaGcgCGugCGCCuGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 50174 0.68 0.526722
Target:  5'- aCCGUCGCagGCACGUucaugaugcucuuGCGAUCGACGc -3'
miRNA:   3'- -GGCAGCG--CGUGCGcc-----------UGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 19018 0.68 0.522589
Target:  5'- -gGUCGCuGCAgGCGG-CGAUCGcCGa -3'
miRNA:   3'- ggCAGCG-CGUgCGCCuGCUAGCuGUa -5'
24861 5' -57 NC_005284.1 + 40165 0.68 0.522589
Target:  5'- gCGUCGagguaGCGCGCGaGCGuUCGGCGc -3'
miRNA:   3'- gGCAGCg----CGUGCGCcUGCuAGCUGUa -5'
24861 5' -57 NC_005284.1 + 17939 0.68 0.512312
Target:  5'- gCCGagGCGgACGCGGcaaagcaaguGCGAUCGcCAa -3'
miRNA:   3'- -GGCagCGCgUGCGCC----------UGCUAGCuGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.