miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 5' -57 NC_005284.1 + 24376 1.08 0.001
Target:  5'- gCCGUCGCGCACGCGGACGAUCGACAUg -3'
miRNA:   3'- -GGCAGCGCGUGCGCCUGCUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 10668 0.77 0.145357
Target:  5'- aCUGgugCGCGC-CGCGGgcGCGAUCGACAc -3'
miRNA:   3'- -GGCa--GCGCGuGCGCC--UGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 11996 0.74 0.258282
Target:  5'- gCGUCGgGCAagcucaauuucCGCGGACuGAUUGACAg -3'
miRNA:   3'- gGCAGCgCGU-----------GCGCCUG-CUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 50120 0.73 0.292348
Target:  5'- gCGaUCGCGCACGCGG-CGuUCGcCAUg -3'
miRNA:   3'- gGC-AGCGCGUGCGCCuGCuAGCuGUA- -5'
24861 5' -57 NC_005284.1 + 24657 0.71 0.34578
Target:  5'- -aGUCGCGCGCgGCGuGCaGUCGACGUg -3'
miRNA:   3'- ggCAGCGCGUG-CGCcUGcUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 50486 0.71 0.379318
Target:  5'- gCGUCGCGUgucacGCGUGGAUcgaucagaaccgGGUCGGCAc -3'
miRNA:   3'- gGCAGCGCG-----UGCGCCUG------------CUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 3133 0.7 0.405863
Target:  5'- aUCGUCGCGCGCGCG--UGAUUcACAUa -3'
miRNA:   3'- -GGCAGCGCGUGCGCcuGCUAGcUGUA- -5'
24861 5' -57 NC_005284.1 + 9230 0.7 0.405863
Target:  5'- cUCGUCGaggcgcugaCGCGCGCGG-CGggCGGCAc -3'
miRNA:   3'- -GGCAGC---------GCGUGCGCCuGCuaGCUGUa -5'
24861 5' -57 NC_005284.1 + 16529 0.7 0.413136
Target:  5'- gCCGggCGCGCugGCGGcaccaggacaauCGAUCGAgCAa -3'
miRNA:   3'- -GGCa-GCGCGugCGCCu-----------GCUAGCU-GUa -5'
24861 5' -57 NC_005284.1 + 39350 0.7 0.414967
Target:  5'- -aGUCGUGCACGCcauGGACGAacuggCGGCc- -3'
miRNA:   3'- ggCAGCGCGUGCG---CCUGCUa----GCUGua -5'
24861 5' -57 NC_005284.1 + 46155 0.7 0.418644
Target:  5'- gCCGUCGCGCACcgcauugaaauacgaGCcGGCcGUCGACGa -3'
miRNA:   3'- -GGCAGCGCGUG---------------CGcCUGcUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 12131 0.7 0.433546
Target:  5'- gCCGUCgGCGCGCuCGGugGugCGGCAa -3'
miRNA:   3'- -GGCAG-CGCGUGcGCCugCuaGCUGUa -5'
24861 5' -57 NC_005284.1 + 18192 0.7 0.433546
Target:  5'- gCCGgggaaGUACGCGG-CGAUCGACGa -3'
miRNA:   3'- -GGCagcg-CGUGCGCCuGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 9749 0.7 0.443015
Target:  5'- gCCGaaGCGCGgGCGGuCGAggCGACGg -3'
miRNA:   3'- -GGCagCGCGUgCGCCuGCUa-GCUGUa -5'
24861 5' -57 NC_005284.1 + 35588 0.69 0.481013
Target:  5'- cUCGUCGCGC-UGCGGA-GAcucaggcagccugUCGACAg -3'
miRNA:   3'- -GGCAGCGCGuGCGCCUgCU-------------AGCUGUa -5'
24861 5' -57 NC_005284.1 + 17982 0.69 0.481013
Target:  5'- gCCGUCggguauugcccagGCGCGCGCaGucaaguCGGUCGACGg -3'
miRNA:   3'- -GGCAG-------------CGCGUGCGcCu-----GCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 19293 0.69 0.492017
Target:  5'- aCCGUCGaCGgACGCaaguacauGGcauCGAUCGGCGUg -3'
miRNA:   3'- -GGCAGC-GCgUGCG--------CCu--GCUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 5456 0.69 0.492017
Target:  5'- gUCGUCGCGCACGCGuGcCGugccaaccAUCGcCGUa -3'
miRNA:   3'- -GGCAGCGCGUGCGC-CuGC--------UAGCuGUA- -5'
24861 5' -57 NC_005284.1 + 7983 0.69 0.492017
Target:  5'- uCCGagaaguUCGCGCGCGCGaguGACGAcgCGcACAUg -3'
miRNA:   3'- -GGC------AGCGCGUGCGC---CUGCUa-GC-UGUA- -5'
24861 5' -57 NC_005284.1 + 17939 0.68 0.512312
Target:  5'- gCCGagGCGgACGCGGcaaagcaaguGCGAUCGcCAa -3'
miRNA:   3'- -GGCagCGCgUGCGCC----------UGCUAGCuGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.