miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24861 5' -57 NC_005284.1 + 19293 0.69 0.492017
Target:  5'- aCCGUCGaCGgACGCaaguacauGGcauCGAUCGGCGUg -3'
miRNA:   3'- -GGCAGC-GCgUGCG--------CCu--GCUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 21560 0.66 0.660794
Target:  5'- gCCGaCGaGCaggccGCGCGGGCGuUCGACGc -3'
miRNA:   3'- -GGCaGCgCG-----UGCGCCUGCuAGCUGUa -5'
24861 5' -57 NC_005284.1 + 22242 0.66 0.660794
Target:  5'- aCGUCGagguGUuCGCGGGCGGggCGGCGc -3'
miRNA:   3'- gGCAGCg---CGuGCGCCUGCUa-GCUGUa -5'
24861 5' -57 NC_005284.1 + 24376 1.08 0.001
Target:  5'- gCCGUCGCGCACGCGGACGAUCGACAUg -3'
miRNA:   3'- -GGCAGCGCGUGCGCCUGCUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 24657 0.71 0.34578
Target:  5'- -aGUCGCGCGCgGCGuGCaGUCGACGUg -3'
miRNA:   3'- ggCAGCGCGUG-CGCcUGcUAGCUGUA- -5'
24861 5' -57 NC_005284.1 + 25580 0.66 0.628566
Target:  5'- gCCGUC-CGCGCgGCGGuugcCGAcuguuUCGACGa -3'
miRNA:   3'- -GGCAGcGCGUG-CGCCu---GCU-----AGCUGUa -5'
24861 5' -57 NC_005284.1 + 27788 0.66 0.660794
Target:  5'- aCCgGUCGCGCcCuuuuCGGACGAgUGGCGUg -3'
miRNA:   3'- -GG-CAGCGCGuGc---GCCUGCUaGCUGUA- -5'
24861 5' -57 NC_005284.1 + 31009 0.66 0.660794
Target:  5'- gCCGcCGUGCGUGCGGAaguugcCGGUUGGCu- -3'
miRNA:   3'- -GGCaGCGCGUGCGCCU------GCUAGCUGua -5'
24861 5' -57 NC_005284.1 + 35588 0.69 0.481013
Target:  5'- cUCGUCGCGC-UGCGGA-GAcucaggcagccugUCGACAg -3'
miRNA:   3'- -GGCAGCGCGuGCGCCUgCU-------------AGCUGUa -5'
24861 5' -57 NC_005284.1 + 39350 0.7 0.414967
Target:  5'- -aGUCGUGCACGCcauGGACGAacuggCGGCc- -3'
miRNA:   3'- ggCAGCGCGUGCG---CCUGCUa----GCUGua -5'
24861 5' -57 NC_005284.1 + 40165 0.68 0.522589
Target:  5'- gCGUCGagguaGCGCGCGaGCGuUCGGCGc -3'
miRNA:   3'- gGCAGCg----CGUGCGCcUGCuAGCUGUa -5'
24861 5' -57 NC_005284.1 + 42747 0.66 0.628566
Target:  5'- uCCGcCGCGaucauUACGUGGGCGAUugCGACc- -3'
miRNA:   3'- -GGCaGCGC-----GUGCGCCUGCUA--GCUGua -5'
24861 5' -57 NC_005284.1 + 45554 0.66 0.628566
Target:  5'- cCCGcCGCGCGCGUcaGCGccUCGACGa -3'
miRNA:   3'- -GGCaGCGCGUGCGccUGCu-AGCUGUa -5'
24861 5' -57 NC_005284.1 + 46155 0.7 0.418644
Target:  5'- gCCGUCGCGCACcgcauugaaauacgaGCcGGCcGUCGACGa -3'
miRNA:   3'- -GGCAGCGCGUG---------------CGcCUGcUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 46201 0.66 0.650064
Target:  5'- ---cCGCGCAUGCGG-CGGUCGuauuCGg -3'
miRNA:   3'- ggcaGCGCGUGCGCCuGCUAGCu---GUa -5'
24861 5' -57 NC_005284.1 + 46349 0.67 0.575026
Target:  5'- gCCGUCGCGgGCucgcCGGACcaucUCGGCAUc -3'
miRNA:   3'- -GGCAGCGCgUGc---GCCUGcu--AGCUGUA- -5'
24861 5' -57 NC_005284.1 + 50120 0.73 0.292348
Target:  5'- gCGaUCGCGCACGCGG-CGuUCGcCAUg -3'
miRNA:   3'- gGC-AGCGCGUGCGCCuGCuAGCuGUA- -5'
24861 5' -57 NC_005284.1 + 50174 0.68 0.526722
Target:  5'- aCCGUCGCagGCACGUucaugaugcucuuGCGAUCGACGc -3'
miRNA:   3'- -GGCAGCG--CGUGCGcc-----------UGCUAGCUGUa -5'
24861 5' -57 NC_005284.1 + 50486 0.71 0.379318
Target:  5'- gCGUCGCGUgucacGCGUGGAUcgaucagaaccgGGUCGGCAc -3'
miRNA:   3'- gGCAGCGCG-----UGCGCCUG------------CUAGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.