Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24861 | 5' | -57 | NC_005284.1 | + | 9484 | 0.66 | 0.660794 |
Target: 5'- -aGUCGCgGCgACGCaGGCGG-CGACAg -3' miRNA: 3'- ggCAGCG-CG-UGCGcCUGCUaGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 19018 | 0.68 | 0.522589 |
Target: 5'- -gGUCGCuGCAgGCGG-CGAUCGcCGa -3' miRNA: 3'- ggCAGCG-CGUgCGCCuGCUAGCuGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 10186 | 0.68 | 0.532945 |
Target: 5'- uCCGgCuuGCugGCGG-CGGUCGGCGg -3' miRNA: 3'- -GGCaGcgCGugCGCCuGCUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 15728 | 0.67 | 0.603863 |
Target: 5'- uCUGUCGaCGCGCGCGguguggggcggaauGugGGcCGACAg -3' miRNA: 3'- -GGCAGC-GCGUGCGC--------------CugCUaGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 8047 | 0.67 | 0.60708 |
Target: 5'- gUGUCGUGUucggugaaACGcCGGAUGGUUGGCGg -3' miRNA: 3'- gGCAGCGCG--------UGC-GCCUGCUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 42747 | 0.66 | 0.628566 |
Target: 5'- uCCGcCGCGaucauUACGUGGGCGAUugCGACc- -3' miRNA: 3'- -GGCaGCGC-----GUGCGCCUGCUA--GCUGua -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 7885 | 0.66 | 0.628566 |
Target: 5'- --aUCGCaGUGCGCGagccGACGGUCGGCGa -3' miRNA: 3'- ggcAGCG-CGUGCGC----CUGCUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 25580 | 0.66 | 0.628566 |
Target: 5'- gCCGUC-CGCGCgGCGGuugcCGAcuguuUCGACGa -3' miRNA: 3'- -GGCAGcGCGUG-CGCCu---GCU-----AGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 18063 | 0.66 | 0.639318 |
Target: 5'- uCCGguggCGgGCGCuguGUGGAUGAUCGAa-- -3' miRNA: 3'- -GGCa---GCgCGUG---CGCCUGCUAGCUgua -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 19293 | 0.69 | 0.492017 |
Target: 5'- aCCGUCGaCGgACGCaaguacauGGcauCGAUCGGCGUg -3' miRNA: 3'- -GGCAGC-GCgUGCG--------CCu--GCUAGCUGUA- -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 7983 | 0.69 | 0.492017 |
Target: 5'- uCCGagaaguUCGCGCGCGCGaguGACGAcgCGcACAUg -3' miRNA: 3'- -GGC------AGCGCGUGCGC---CUGCUa-GC-UGUA- -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 35588 | 0.69 | 0.481013 |
Target: 5'- cUCGUCGCGC-UGCGGA-GAcucaggcagccugUCGACAg -3' miRNA: 3'- -GGCAGCGCGuGCGCCUgCU-------------AGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 11996 | 0.74 | 0.258282 |
Target: 5'- gCGUCGgGCAagcucaauuucCGCGGACuGAUUGACAg -3' miRNA: 3'- gGCAGCgCGU-----------GCGCCUG-CUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 50120 | 0.73 | 0.292348 |
Target: 5'- gCGaUCGCGCACGCGG-CGuUCGcCAUg -3' miRNA: 3'- gGC-AGCGCGUGCGCCuGCuAGCuGUA- -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 50486 | 0.71 | 0.379318 |
Target: 5'- gCGUCGCGUgucacGCGUGGAUcgaucagaaccgGGUCGGCAc -3' miRNA: 3'- gGCAGCGCG-----UGCGCCUG------------CUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 9230 | 0.7 | 0.405863 |
Target: 5'- cUCGUCGaggcgcugaCGCGCGCGG-CGggCGGCAc -3' miRNA: 3'- -GGCAGC---------GCGUGCGCCuGCuaGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 12131 | 0.7 | 0.433546 |
Target: 5'- gCCGUCgGCGCGCuCGGugGugCGGCAa -3' miRNA: 3'- -GGCAG-CGCGUGcGCCugCuaGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 18192 | 0.7 | 0.433546 |
Target: 5'- gCCGgggaaGUACGCGG-CGAUCGACGa -3' miRNA: 3'- -GGCagcg-CGUGCGCCuGCUAGCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 9749 | 0.7 | 0.443015 |
Target: 5'- gCCGaaGCGCGgGCGGuCGAggCGACGg -3' miRNA: 3'- -GGCagCGCGUgCGCCuGCUa-GCUGUa -5' |
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24861 | 5' | -57 | NC_005284.1 | + | 17982 | 0.69 | 0.481013 |
Target: 5'- gCCGUCggguauugcccagGCGCGCGCaGucaaguCGGUCGACGg -3' miRNA: 3'- -GGCAG-------------CGCGUGCGcCu-----GCUAGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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