Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24861 | 5' | -57 | NC_005284.1 | + | 9749 | 0.7 | 0.443015 |
Target: 5'- gCCGaaGCGCGgGCGGuCGAggCGACGg -3' miRNA: 3'- -GGCagCGCGUgCGCCuGCUa-GCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 17982 | 0.69 | 0.481013 |
Target: 5'- gCCGUCggguauugcccagGCGCGCGCaGucaaguCGGUCGACGg -3' miRNA: 3'- -GGCAG-------------CGCGUGCGcCu-----GCUAGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 35588 | 0.69 | 0.481013 |
Target: 5'- cUCGUCGCGC-UGCGGA-GAcucaggcagccugUCGACAg -3' miRNA: 3'- -GGCAGCGCGuGCGCCUgCU-------------AGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 7983 | 0.69 | 0.492017 |
Target: 5'- uCCGagaaguUCGCGCGCGCGaguGACGAcgCGcACAUg -3' miRNA: 3'- -GGC------AGCGCGUGCGC---CUGCUa-GC-UGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 5456 | 0.69 | 0.492017 |
Target: 5'- gUCGUCGCGCACGCGuGcCGugccaaccAUCGcCGUa -3' miRNA: 3'- -GGCAGCGCGUGCGC-CuGC--------UAGCuGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 46155 | 0.7 | 0.418644 |
Target: 5'- gCCGUCGCGCACcgcauugaaauacgaGCcGGCcGUCGACGa -3' miRNA: 3'- -GGCAGCGCGUG---------------CGcCUGcUAGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 39350 | 0.7 | 0.414967 |
Target: 5'- -aGUCGUGCACGCcauGGACGAacuggCGGCc- -3' miRNA: 3'- ggCAGCGCGUGCG---CCUGCUa----GCUGua -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 16529 | 0.7 | 0.413136 |
Target: 5'- gCCGggCGCGCugGCGGcaccaggacaauCGAUCGAgCAa -3' miRNA: 3'- -GGCa-GCGCGugCGCCu-----------GCUAGCU-GUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 3133 | 0.7 | 0.405863 |
Target: 5'- aUCGUCGCGCGCGCG--UGAUUcACAUa -3' miRNA: 3'- -GGCAGCGCGUGCGCcuGCUAGcUGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 24657 | 0.71 | 0.34578 |
Target: 5'- -aGUCGCGCGCgGCGuGCaGUCGACGUg -3' miRNA: 3'- ggCAGCGCGUG-CGCcUGcUAGCUGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 17939 | 0.68 | 0.512312 |
Target: 5'- gCCGagGCGgACGCGGcaaagcaaguGCGAUCGcCAa -3' miRNA: 3'- -GGCagCGCgUGCGCC----------UGCUAGCuGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 40165 | 0.68 | 0.522589 |
Target: 5'- gCGUCGagguaGCGCGCGaGCGuUCGGCGc -3' miRNA: 3'- gGCAGCg----CGUGCGCcUGCuAGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 50174 | 0.68 | 0.526722 |
Target: 5'- aCCGUCGCagGCACGUucaugaugcucuuGCGAUCGACGc -3' miRNA: 3'- -GGCAGCG--CGUGCGcc-----------UGCUAGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 46349 | 0.67 | 0.575026 |
Target: 5'- gCCGUCGCGgGCucgcCGGACcaucUCGGCAUc -3' miRNA: 3'- -GGCAGCGCgUGc---GCCUGcu--AGCUGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 9215 | 0.67 | 0.583543 |
Target: 5'- gCGUCGauagccgaGUGCGCGGGCGAcgcgccacgcggCGGCAUa -3' miRNA: 3'- gGCAGCg-------CGUGCGCCUGCUa-----------GCUGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 45554 | 0.66 | 0.628566 |
Target: 5'- cCCGcCGCGCGCGUcaGCGccUCGACGa -3' miRNA: 3'- -GGCaGCGCGUGCGccUGCu-AGCUGUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 46201 | 0.66 | 0.650064 |
Target: 5'- ---cCGCGCAUGCGG-CGGUCGuauuCGg -3' miRNA: 3'- ggcaGCGCGUGCGCCuGCUAGCu---GUa -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 27788 | 0.66 | 0.660794 |
Target: 5'- aCCgGUCGCGCcCuuuuCGGACGAgUGGCGUg -3' miRNA: 3'- -GG-CAGCGCGuGc---GCCUGCUaGCUGUA- -5' |
|||||||
24861 | 5' | -57 | NC_005284.1 | + | 24376 | 1.08 | 0.001 |
Target: 5'- gCCGUCGCGCACGCGGACGAUCGACAUg -3' miRNA: 3'- -GGCAGCGCGUGCGCCUGCUAGCUGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home