miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 3' -53.6 NC_005284.1 + 8389 0.66 0.83852
Target:  5'- gGCGuUUCAguc-GCAGGGCGCaaaggucaagguGUCGGa -3'
miRNA:   3'- gCGC-AGGUaauaCGUCUCGCG------------CAGCC- -5'
24862 3' -53.6 NC_005284.1 + 8549 0.66 0.820417
Target:  5'- uGCGUCCAUUccGCAucccacccGCG-GUCGGc -3'
miRNA:   3'- gCGCAGGUAAuaCGUcu------CGCgCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 1659 0.66 0.811061
Target:  5'- cCGCGUCCuGUUucgccGUGCgAGgcgugauguAGCGCGcCGGa -3'
miRNA:   3'- -GCGCAGG-UAA-----UACG-UC---------UCGCGCaGCC- -5'
24862 3' -53.6 NC_005284.1 + 12138 0.67 0.771856
Target:  5'- gCGCGcUCgGUgGUGCGGcaAGCGCGgcugUCGGc -3'
miRNA:   3'- -GCGC-AGgUAaUACGUC--UCGCGC----AGCC- -5'
24862 3' -53.6 NC_005284.1 + 11848 0.67 0.750298
Target:  5'- aGCGgcUCgCGU--UGCAGgccgacuGGCGCGUCGGc -3'
miRNA:   3'- gCGC--AG-GUAauACGUC-------UCGCGCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 40273 0.68 0.708929
Target:  5'- aGCGUCgGcgAUgGCugcuGCGCGUCGGa -3'
miRNA:   3'- gCGCAGgUaaUA-CGucu-CGCGCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 7247 0.69 0.676285
Target:  5'- aGC-UUCA--AUGCGGAGCGCacgGUCGGc -3'
miRNA:   3'- gCGcAGGUaaUACGUCUCGCG---CAGCC- -5'
24862 3' -53.6 NC_005284.1 + 46269 0.69 0.654292
Target:  5'- gCGCGUCCGaugUcgGCGGAaGCcaucagcgcaaGCGUUGGu -3'
miRNA:   3'- -GCGCAGGUa--AuaCGUCU-CG-----------CGCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 8299 0.7 0.588143
Target:  5'- gGCGUCgGccAUGCAcGAGCagcuaacgccaGCGUCGGa -3'
miRNA:   3'- gCGCAGgUaaUACGU-CUCG-----------CGCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 32796 0.71 0.512734
Target:  5'- uGCGUCggccugcgCGgguUGCGGGGCGgCGUCGGu -3'
miRNA:   3'- gCGCAG--------GUaauACGUCUCGC-GCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 16519 0.71 0.512734
Target:  5'- uGCGUCU--UGUGCcGGGCGCGcuggCGGc -3'
miRNA:   3'- gCGCAGGuaAUACGuCUCGCGCa---GCC- -5'
24862 3' -53.6 NC_005284.1 + 29006 0.78 0.222288
Target:  5'- uGCGuUCCGgauUGCAGAaaaauGCGCGUCGGu -3'
miRNA:   3'- gCGC-AGGUaauACGUCU-----CGCGCAGCC- -5'
24862 3' -53.6 NC_005284.1 + 24087 1.11 0.001275
Target:  5'- aCGCGUCCAUUAUGCAGAGCGCGUCGGc -3'
miRNA:   3'- -GCGCAGGUAAUACGUCUCGCGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.