Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 3' | -53.6 | NC_005284.1 | + | 24087 | 1.11 | 0.001275 |
Target: 5'- aCGCGUCCAUUAUGCAGAGCGCGUCGGc -3' miRNA: 3'- -GCGCAGGUAAUACGUCUCGCGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 29006 | 0.78 | 0.222288 |
Target: 5'- uGCGuUCCGgauUGCAGAaaaauGCGCGUCGGu -3' miRNA: 3'- gCGC-AGGUaauACGUCU-----CGCGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 16519 | 0.71 | 0.512734 |
Target: 5'- uGCGUCU--UGUGCcGGGCGCGcuggCGGc -3' miRNA: 3'- gCGCAGGuaAUACGuCUCGCGCa---GCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 32796 | 0.71 | 0.512734 |
Target: 5'- uGCGUCggccugcgCGgguUGCGGGGCGgCGUCGGu -3' miRNA: 3'- gCGCAG--------GUaauACGUCUCGC-GCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 8299 | 0.7 | 0.588143 |
Target: 5'- gGCGUCgGccAUGCAcGAGCagcuaacgccaGCGUCGGa -3' miRNA: 3'- gCGCAGgUaaUACGU-CUCG-----------CGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 46269 | 0.69 | 0.654292 |
Target: 5'- gCGCGUCCGaugUcgGCGGAaGCcaucagcgcaaGCGUUGGu -3' miRNA: 3'- -GCGCAGGUa--AuaCGUCU-CG-----------CGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 7247 | 0.69 | 0.676285 |
Target: 5'- aGC-UUCA--AUGCGGAGCGCacgGUCGGc -3' miRNA: 3'- gCGcAGGUaaUACGUCUCGCG---CAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 40273 | 0.68 | 0.708929 |
Target: 5'- aGCGUCgGcgAUgGCugcuGCGCGUCGGa -3' miRNA: 3'- gCGCAGgUaaUA-CGucu-CGCGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 11848 | 0.67 | 0.750298 |
Target: 5'- aGCGgcUCgCGU--UGCAGgccgacuGGCGCGUCGGc -3' miRNA: 3'- gCGC--AG-GUAauACGUC-------UCGCGCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 12138 | 0.67 | 0.771856 |
Target: 5'- gCGCGcUCgGUgGUGCGGcaAGCGCGgcugUCGGc -3' miRNA: 3'- -GCGC-AGgUAaUACGUC--UCGCGC----AGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 1659 | 0.66 | 0.811061 |
Target: 5'- cCGCGUCCuGUUucgccGUGCgAGgcgugauguAGCGCGcCGGa -3' miRNA: 3'- -GCGCAGG-UAA-----UACG-UC---------UCGCGCaGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 8549 | 0.66 | 0.820417 |
Target: 5'- uGCGUCCAUUccGCAucccacccGCG-GUCGGc -3' miRNA: 3'- gCGCAGGUAAuaCGUcu------CGCgCAGCC- -5' |
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24862 | 3' | -53.6 | NC_005284.1 | + | 8389 | 0.66 | 0.83852 |
Target: 5'- gGCGuUUCAguc-GCAGGGCGCaaaggucaagguGUCGGa -3' miRNA: 3'- gCGC-AGGUaauaCGUCUCGCG------------CAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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