miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 5' -65.8 NC_005284.1 + 13603 0.66 0.26117
Target:  5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3'
miRNA:   3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5'
24862 5' -65.8 NC_005284.1 + 15960 0.66 0.26117
Target:  5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3'
miRNA:   3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 21571 0.66 0.248913
Target:  5'- gGCCGcGCgGGC-GUUCGACGcGCaGCGg -3'
miRNA:   3'- gCGGC-CGgCCGaCGAGCUGC-CGgCGU- -5'
24862 5' -65.8 NC_005284.1 + 39500 0.66 0.248913
Target:  5'- gGCgCGGuuGGUcagugcauguggUGCUCGccGCGGCCGa- -3'
miRNA:   3'- gCG-GCCggCCG------------ACGAGC--UGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 33228 0.66 0.248913
Target:  5'- aCGCCcGCgCGGcCUGCUCGuCGGCaaGCc -3'
miRNA:   3'- -GCGGcCG-GCC-GACGAGCuGCCGg-CGu -5'
24862 5' -65.8 NC_005284.1 + 47538 0.66 0.245329
Target:  5'- uGCCGaCCGuGCgcuccgcauugaagcUGCUCGACuGCUGCAu -3'
miRNA:   3'- gCGGCcGGC-CG---------------ACGAGCUGcCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 29110 0.66 0.242964
Target:  5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3'
miRNA:   3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 42941 0.66 0.240618
Target:  5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3'
miRNA:   3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 32511 0.66 0.237135
Target:  5'- uGCCucgcGCUGGCUGUUCGucaGGCuCGCc -3'
miRNA:   3'- gCGGc---CGGCCGACGAGCug-CCG-GCGu -5'
24862 5' -65.8 NC_005284.1 + 22071 0.66 0.231423
Target:  5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3'
miRNA:   3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5'
24862 5' -65.8 NC_005284.1 + 43603 0.67 0.225827
Target:  5'- uCGaaGGCUuGCUuuccGCgcgCGGCGGCCGCGg -3'
miRNA:   3'- -GCggCCGGcCGA----CGa--GCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 49327 0.67 0.225827
Target:  5'- aGCC-GCCGGCuUGCUCGACuaaUGCAc -3'
miRNA:   3'- gCGGcCGGCCG-ACGAGCUGccgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 14249 0.67 0.225827
Target:  5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3'
miRNA:   3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5'
24862 5' -65.8 NC_005284.1 + 27958 0.67 0.21498
Target:  5'- gGUCGGCCGGCauacGCUCGAgcaacgcaUGGCucucgagauCGCAu -3'
miRNA:   3'- gCGGCCGGCCGa---CGAGCU--------GCCG---------GCGU- -5'
24862 5' -65.8 NC_005284.1 + 8619 0.67 0.209726
Target:  5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3'
miRNA:   3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5'
24862 5' -65.8 NC_005284.1 + 15681 0.67 0.209726
Target:  5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3'
miRNA:   3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 19027 0.67 0.209726
Target:  5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3'
miRNA:   3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5'
24862 5' -65.8 NC_005284.1 + 20835 0.67 0.204583
Target:  5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3'
miRNA:   3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5'
24862 5' -65.8 NC_005284.1 + 34055 0.67 0.199549
Target:  5'- uCGCUGGCUucGCgGCUCGGaaauacgccuCGGCCGCc -3'
miRNA:   3'- -GCGGCCGGc-CGaCGAGCU----------GCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 7011 0.68 0.189806
Target:  5'- gCGCUcGCCgGGCUGaCU-GGCGGCCGUu -3'
miRNA:   3'- -GCGGcCGG-CCGAC-GAgCUGCCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.