Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 21571 | 0.66 | 0.248913 |
Target: 5'- gGCCGcGCgGGC-GUUCGACGcGCaGCGg -3' miRNA: 3'- gCGGC-CGgCCGaCGAGCUGC-CGgCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 32511 | 0.66 | 0.237135 |
Target: 5'- uGCCucgcGCUGGCUGUUCGucaGGCuCGCc -3' miRNA: 3'- gCGGc---CGGCCGACGAGCug-CCG-GCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 47538 | 0.66 | 0.245329 |
Target: 5'- uGCCGaCCGuGCgcuccgcauugaagcUGCUCGACuGCUGCAu -3' miRNA: 3'- gCGGCcGGC-CG---------------ACGAGCUGcCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 22071 | 0.66 | 0.231423 |
Target: 5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3' miRNA: 3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 42941 | 0.66 | 0.240618 |
Target: 5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3' miRNA: 3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 29110 | 0.66 | 0.242964 |
Target: 5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3' miRNA: 3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 33228 | 0.66 | 0.248913 |
Target: 5'- aCGCCcGCgCGGcCUGCUCGuCGGCaaGCc -3' miRNA: 3'- -GCGGcCG-GCC-GACGAGCuGCCGg-CGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 15960 | 0.66 | 0.26117 |
Target: 5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3' miRNA: 3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 39500 | 0.66 | 0.248913 |
Target: 5'- gGCgCGGuuGGUcagugcauguggUGCUCGccGCGGCCGa- -3' miRNA: 3'- gCG-GCCggCCG------------ACGAGC--UGCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 13603 | 0.66 | 0.26117 |
Target: 5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3' miRNA: 3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 43603 | 0.67 | 0.225827 |
Target: 5'- uCGaaGGCUuGCUuuccGCgcgCGGCGGCCGCGg -3' miRNA: 3'- -GCggCCGGcCGA----CGa--GCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 14249 | 0.67 | 0.225827 |
Target: 5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3' miRNA: 3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 8619 | 0.67 | 0.209726 |
Target: 5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3' miRNA: 3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 34055 | 0.67 | 0.199549 |
Target: 5'- uCGCUGGCUucGCgGCUCGGaaauacgccuCGGCCGCc -3' miRNA: 3'- -GCGGCCGGc-CGaCGAGCU----------GCCGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 20835 | 0.67 | 0.204583 |
Target: 5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3' miRNA: 3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 27958 | 0.67 | 0.21498 |
Target: 5'- gGUCGGCCGGCauacGCUCGAgcaacgcaUGGCucucgagauCGCAu -3' miRNA: 3'- gCGGCCGGCCGa---CGAGCU--------GCCG---------GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 15681 | 0.67 | 0.209726 |
Target: 5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3' miRNA: 3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 19027 | 0.67 | 0.209726 |
Target: 5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3' miRNA: 3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 49327 | 0.67 | 0.225827 |
Target: 5'- aGCC-GCCGGCuUGCUCGACuaaUGCAc -3' miRNA: 3'- gCGGcCGGCCG-ACGAGCUGccgGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 46479 | 0.68 | 0.167259 |
Target: 5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3' miRNA: 3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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