Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 35839 | 0.68 | 0.18933 |
Target: 5'- uCGCCGGCCaucGGCgggGUgauuaggUCGAuCGGCgCGCGc -3' miRNA: 3'- -GCGGCCGG---CCGa--CG-------AGCU-GCCG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 889 | 0.68 | 0.180482 |
Target: 5'- gCGCaGGCCaaGGCaaGCgaCGACGGCCGCc -3' miRNA: 3'- -GCGgCCGG--CCGa-CGa-GCUGCCGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 46181 | 0.68 | 0.180027 |
Target: 5'- aGCCGGCCGucgacgagagaccGC-GCaugCGGCGGUCGUAu -3' miRNA: 3'- gCGGCCGGC-------------CGaCGa--GCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 23325 | 0.68 | 0.170698 |
Target: 5'- cCGgCGGCaCGGCggucaauuggggGCcCGGCGcGCCGCAg -3' miRNA: 3'- -GCgGCCG-GCCGa-----------CGaGCUGC-CGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 12762 | 0.68 | 0.189806 |
Target: 5'- cCGCuCGGCCGGCacgcGCUCGcgaagauacGCuGUCGCAc -3' miRNA: 3'- -GCG-GCCGGCCGa---CGAGC---------UGcCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 46479 | 0.68 | 0.167259 |
Target: 5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3' miRNA: 3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 16681 | 0.68 | 0.167259 |
Target: 5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3' miRNA: 3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 33584 | 0.69 | 0.141186 |
Target: 5'- aGCCGGgcgugcacgucaggaCCGGCuccgcgUGCUCGAUGaGCCGUu -3' miRNA: 3'- gCGGCC---------------GGCCG------ACGAGCUGC-CGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 21746 | 0.69 | 0.142286 |
Target: 5'- aGCCuGCgGGCUGCUCuugccgcuggcacuGAgCGGCUGCGc -3' miRNA: 3'- gCGGcCGgCCGACGAG--------------CU-GCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 45645 | 0.7 | 0.132664 |
Target: 5'- gGCaGGCUGGCgGCUCGuCGGUgCGCGa -3' miRNA: 3'- gCGgCCGGCCGaCGAGCuGCCG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 17355 | 0.7 | 0.132664 |
Target: 5'- uCG-CGGCCGGCUGCgauaaCGuccCGGCCGg- -3' miRNA: 3'- -GCgGCCGGCCGACGa----GCu--GCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 47734 | 0.7 | 0.119509 |
Target: 5'- gGCCGuGCuCGGCgGUaCGGCGGCgCGCGu -3' miRNA: 3'- gCGGC-CG-GCCGaCGaGCUGCCG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 53780 | 0.7 | 0.129255 |
Target: 5'- uGCUGauGCCGGCUGCUgCGGCGaG-CGCAu -3' miRNA: 3'- gCGGC--CGGCCGACGA-GCUGC-CgGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 17874 | 0.71 | 0.104773 |
Target: 5'- aGaaGGCCGGCcGCcggaUCGGCGGgCGCAu -3' miRNA: 3'- gCggCCGGCCGaCG----AGCUGCCgGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 4170 | 0.71 | 0.104496 |
Target: 5'- --aUGGCgaacgacgugaauCGGCUGCUCGACGGCCuCAa -3' miRNA: 3'- gcgGCCG-------------GCCGACGAGCUGCCGGcGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 37425 | 0.71 | 0.113396 |
Target: 5'- aGCCGGCCGGgacGUuaUCGcagcCGGCCGCGa -3' miRNA: 3'- gCGGCCGGCCga-CG--AGCu---GCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 24329 | 0.72 | 0.084475 |
Target: 5'- aCGCCGGCCGGCaGCacacgaaUCGGCGaCuCGCGa -3' miRNA: 3'- -GCGGCCGGCCGaCG-------AGCUGCcG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 39514 | 0.72 | 0.091758 |
Target: 5'- uCGUCGGUCGGCUGUgcCGAUGcGCCGgGa -3' miRNA: 3'- -GCGGCCGGCCGACGa-GCUGC-CGGCgU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 4922 | 0.72 | 0.091758 |
Target: 5'- gCGCCGGCa--CUGCaaucguauaUCGACGGCCGUg -3' miRNA: 3'- -GCGGCCGgccGACG---------AGCUGCCGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 16882 | 0.73 | 0.080287 |
Target: 5'- uGCUGGCCGGUgcGUUCGACGGCaagacgacguCGCu -3' miRNA: 3'- gCGGCCGGCCGa-CGAGCUGCCG----------GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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