Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 13603 | 0.66 | 0.26117 |
Target: 5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3' miRNA: 3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 15960 | 0.66 | 0.26117 |
Target: 5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3' miRNA: 3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 33228 | 0.66 | 0.248913 |
Target: 5'- aCGCCcGCgCGGcCUGCUCGuCGGCaaGCc -3' miRNA: 3'- -GCGGcCG-GCC-GACGAGCuGCCGg-CGu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 29110 | 0.66 | 0.242964 |
Target: 5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3' miRNA: 3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 42941 | 0.66 | 0.240618 |
Target: 5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3' miRNA: 3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 22071 | 0.66 | 0.231423 |
Target: 5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3' miRNA: 3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home