miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 5' -65.8 NC_005284.1 + 24122 1.07 0.000147
Target:  5'- cCGCCGGCCGGCUGCUCGACGGCCGCAc -3'
miRNA:   3'- -GCGGCCGGCCGACGAGCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 38110 0.81 0.019379
Target:  5'- aCGCCGacGCCGGCcucacGCUCGACGGCCGgAa -3'
miRNA:   3'- -GCGGC--CGGCCGa----CGAGCUGCCGGCgU- -5'
24862 5' -65.8 NC_005284.1 + 33374 0.79 0.024851
Target:  5'- uCGUCGGCCGGCgcUGC-CGACGGCuCGCc -3'
miRNA:   3'- -GCGGCCGGCCG--ACGaGCUGCCG-GCGu -5'
24862 5' -65.8 NC_005284.1 + 21492 0.74 0.064735
Target:  5'- uGuuGGCCGcGCUGCUuggcaUGGCGGCCGg- -3'
miRNA:   3'- gCggCCGGC-CGACGA-----GCUGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 30678 0.74 0.066328
Target:  5'- aGCCGGCCGGCgGCUuucuugcCGACGcGCUcuGCAu -3'
miRNA:   3'- gCGGCCGGCCGaCGA-------GCUGC-CGG--CGU- -5'
24862 5' -65.8 NC_005284.1 + 33964 0.73 0.076914
Target:  5'- uCGUCGGCCGGCgcugcugcgggcUGCUCGACagggggugcggcgagGGCCGa- -3'
miRNA:   3'- -GCGGCCGGCCG------------ACGAGCUG---------------CCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 16882 0.73 0.080287
Target:  5'- uGCUGGCCGGUgcGUUCGACGGCaagacgacguCGCu -3'
miRNA:   3'- gCGGCCGGCCGa-CGAGCUGCCG----------GCGu -5'
24862 5' -65.8 NC_005284.1 + 24329 0.72 0.084475
Target:  5'- aCGCCGGCCGGCaGCacacgaaUCGGCGaCuCGCGa -3'
miRNA:   3'- -GCGGCCGGCCGaCG-------AGCUGCcG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 4922 0.72 0.091758
Target:  5'- gCGCCGGCa--CUGCaaucguauaUCGACGGCCGUg -3'
miRNA:   3'- -GCGGCCGgccGACG---------AGCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 39514 0.72 0.091758
Target:  5'- uCGUCGGUCGGCUGUgcCGAUGcGCCGgGa -3'
miRNA:   3'- -GCGGCCGGCCGACGa-GCUGC-CGGCgU- -5'
24862 5' -65.8 NC_005284.1 + 4170 0.71 0.104496
Target:  5'- --aUGGCgaacgacgugaauCGGCUGCUCGACGGCCuCAa -3'
miRNA:   3'- gcgGCCG-------------GCCGACGAGCUGCCGGcGU- -5'
24862 5' -65.8 NC_005284.1 + 17874 0.71 0.104773
Target:  5'- aGaaGGCCGGCcGCcggaUCGGCGGgCGCAu -3'
miRNA:   3'- gCggCCGGCCGaCG----AGCUGCCgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 37425 0.71 0.113396
Target:  5'- aGCCGGCCGGgacGUuaUCGcagcCGGCCGCGa -3'
miRNA:   3'- gCGGCCGGCCga-CG--AGCu---GCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 47734 0.7 0.119509
Target:  5'- gGCCGuGCuCGGCgGUaCGGCGGCgCGCGu -3'
miRNA:   3'- gCGGC-CG-GCCGaCGaGCUGCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 53780 0.7 0.129255
Target:  5'- uGCUGauGCCGGCUGCUgCGGCGaG-CGCAu -3'
miRNA:   3'- gCGGC--CGGCCGACGA-GCUGC-CgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 17355 0.7 0.132664
Target:  5'- uCG-CGGCCGGCUGCgauaaCGuccCGGCCGg- -3'
miRNA:   3'- -GCgGCCGGCCGACGa----GCu--GCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 45645 0.7 0.132664
Target:  5'- gGCaGGCUGGCgGCUCGuCGGUgCGCGa -3'
miRNA:   3'- gCGgCCGGCCGaCGAGCuGCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 33584 0.69 0.141186
Target:  5'- aGCCGGgcgugcacgucaggaCCGGCuccgcgUGCUCGAUGaGCCGUu -3'
miRNA:   3'- gCGGCC---------------GGCCG------ACGAGCUGC-CGGCGu -5'
24862 5' -65.8 NC_005284.1 + 21746 0.69 0.142286
Target:  5'- aGCCuGCgGGCUGCUCuugccgcuggcacuGAgCGGCUGCGc -3'
miRNA:   3'- gCGGcCGgCCGACGAG--------------CU-GCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 46479 0.68 0.167259
Target:  5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3'
miRNA:   3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.