miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 5' -65.8 NC_005284.1 + 16681 0.68 0.167259
Target:  5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3'
miRNA:   3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5'
24862 5' -65.8 NC_005284.1 + 23325 0.68 0.170698
Target:  5'- cCGgCGGCaCGGCggucaauuggggGCcCGGCGcGCCGCAg -3'
miRNA:   3'- -GCgGCCG-GCCGa-----------CGaGCUGC-CGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 46181 0.68 0.180027
Target:  5'- aGCCGGCCGucgacgagagaccGC-GCaugCGGCGGUCGUAu -3'
miRNA:   3'- gCGGCCGGC-------------CGaCGa--GCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 889 0.68 0.180482
Target:  5'- gCGCaGGCCaaGGCaaGCgaCGACGGCCGCc -3'
miRNA:   3'- -GCGgCCGG--CCGa-CGa-GCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 35839 0.68 0.18933
Target:  5'- uCGCCGGCCaucGGCgggGUgauuaggUCGAuCGGCgCGCGc -3'
miRNA:   3'- -GCGGCCGG---CCGa--CG-------AGCU-GCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 12762 0.68 0.189806
Target:  5'- cCGCuCGGCCGGCacgcGCUCGcgaagauacGCuGUCGCAc -3'
miRNA:   3'- -GCG-GCCGGCCGa---CGAGC---------UGcCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 7011 0.68 0.189806
Target:  5'- gCGCUcGCCgGGCUGaCU-GGCGGCCGUu -3'
miRNA:   3'- -GCGGcCGG-CCGAC-GAgCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 34055 0.67 0.199549
Target:  5'- uCGCUGGCUucGCgGCUCGGaaauacgccuCGGCCGCc -3'
miRNA:   3'- -GCGGCCGGc-CGaCGAGCU----------GCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 20835 0.67 0.204583
Target:  5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3'
miRNA:   3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5'
24862 5' -65.8 NC_005284.1 + 15681 0.67 0.209726
Target:  5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3'
miRNA:   3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 8619 0.67 0.209726
Target:  5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3'
miRNA:   3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5'
24862 5' -65.8 NC_005284.1 + 19027 0.67 0.209726
Target:  5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3'
miRNA:   3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5'
24862 5' -65.8 NC_005284.1 + 27958 0.67 0.21498
Target:  5'- gGUCGGCCGGCauacGCUCGAgcaacgcaUGGCucucgagauCGCAu -3'
miRNA:   3'- gCGGCCGGCCGa---CGAGCU--------GCCG---------GCGU- -5'
24862 5' -65.8 NC_005284.1 + 14249 0.67 0.225827
Target:  5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3'
miRNA:   3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5'
24862 5' -65.8 NC_005284.1 + 49327 0.67 0.225827
Target:  5'- aGCC-GCCGGCuUGCUCGACuaaUGCAc -3'
miRNA:   3'- gCGGcCGGCCG-ACGAGCUGccgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 43603 0.67 0.225827
Target:  5'- uCGaaGGCUuGCUuuccGCgcgCGGCGGCCGCGg -3'
miRNA:   3'- -GCggCCGGcCGA----CGa--GCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 22071 0.66 0.231423
Target:  5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3'
miRNA:   3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5'
24862 5' -65.8 NC_005284.1 + 32511 0.66 0.237135
Target:  5'- uGCCucgcGCUGGCUGUUCGucaGGCuCGCc -3'
miRNA:   3'- gCGGc---CGGCCGACGAGCug-CCG-GCGu -5'
24862 5' -65.8 NC_005284.1 + 42941 0.66 0.240618
Target:  5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3'
miRNA:   3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 29110 0.66 0.242964
Target:  5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3'
miRNA:   3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.