Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24862 | 5' | -65.8 | NC_005284.1 | + | 33964 | 0.73 | 0.076914 |
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Target: 5'- uCGUCGGCCGGCgcugcugcgggcUGCUCGACagggggugcggcgagGGCCGa- -3' miRNA: 3'- -GCGGCCGGCCG------------ACGAGCUG---------------CCGGCgu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 30678 | 0.74 | 0.066328 |
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Target: 5'- aGCCGGCCGGCgGCUuucuugcCGACGcGCUcuGCAu -3' miRNA: 3'- gCGGCCGGCCGaCGA-------GCUGC-CGG--CGU- -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 21492 | 0.74 | 0.064735 |
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Target: 5'- uGuuGGCCGcGCUGCUuggcaUGGCGGCCGg- -3' miRNA: 3'- gCggCCGGC-CGACGA-----GCUGCCGGCgu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 33374 | 0.79 | 0.024851 |
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Target: 5'- uCGUCGGCCGGCgcUGC-CGACGGCuCGCc -3' miRNA: 3'- -GCGGCCGGCCG--ACGaGCUGCCG-GCGu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 38110 | 0.81 | 0.019379 |
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Target: 5'- aCGCCGacGCCGGCcucacGCUCGACGGCCGgAa -3' miRNA: 3'- -GCGGC--CGGCCGa----CGAGCUGCCGGCgU- -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 24122 | 1.07 | 0.000147 |
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Target: 5'- cCGCCGGCCGGCUGCUCGACGGCCGCAc -3' miRNA: 3'- -GCGGCCGGCCGACGAGCUGCCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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