miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 5' -65.8 NC_005284.1 + 889 0.68 0.180482
Target:  5'- gCGCaGGCCaaGGCaaGCgaCGACGGCCGCc -3'
miRNA:   3'- -GCGgCCGG--CCGa-CGa-GCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 4170 0.71 0.104496
Target:  5'- --aUGGCgaacgacgugaauCGGCUGCUCGACGGCCuCAa -3'
miRNA:   3'- gcgGCCG-------------GCCGACGAGCUGCCGGcGU- -5'
24862 5' -65.8 NC_005284.1 + 4922 0.72 0.091758
Target:  5'- gCGCCGGCa--CUGCaaucguauaUCGACGGCCGUg -3'
miRNA:   3'- -GCGGCCGgccGACG---------AGCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 7011 0.68 0.189806
Target:  5'- gCGCUcGCCgGGCUGaCU-GGCGGCCGUu -3'
miRNA:   3'- -GCGGcCGG-CCGAC-GAgCUGCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 8619 0.67 0.209726
Target:  5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3'
miRNA:   3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5'
24862 5' -65.8 NC_005284.1 + 12762 0.68 0.189806
Target:  5'- cCGCuCGGCCGGCacgcGCUCGcgaagauacGCuGUCGCAc -3'
miRNA:   3'- -GCG-GCCGGCCGa---CGAGC---------UGcCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 13603 0.66 0.26117
Target:  5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3'
miRNA:   3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5'
24862 5' -65.8 NC_005284.1 + 14249 0.67 0.225827
Target:  5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3'
miRNA:   3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5'
24862 5' -65.8 NC_005284.1 + 15681 0.67 0.209726
Target:  5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3'
miRNA:   3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 15960 0.66 0.26117
Target:  5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3'
miRNA:   3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 16681 0.68 0.167259
Target:  5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3'
miRNA:   3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5'
24862 5' -65.8 NC_005284.1 + 16882 0.73 0.080287
Target:  5'- uGCUGGCCGGUgcGUUCGACGGCaagacgacguCGCu -3'
miRNA:   3'- gCGGCCGGCCGa-CGAGCUGCCG----------GCGu -5'
24862 5' -65.8 NC_005284.1 + 17355 0.7 0.132664
Target:  5'- uCG-CGGCCGGCUGCgauaaCGuccCGGCCGg- -3'
miRNA:   3'- -GCgGCCGGCCGACGa----GCu--GCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 17874 0.71 0.104773
Target:  5'- aGaaGGCCGGCcGCcggaUCGGCGGgCGCAu -3'
miRNA:   3'- gCggCCGGCCGaCG----AGCUGCCgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 19027 0.67 0.209726
Target:  5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3'
miRNA:   3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5'
24862 5' -65.8 NC_005284.1 + 20835 0.67 0.204583
Target:  5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3'
miRNA:   3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5'
24862 5' -65.8 NC_005284.1 + 21492 0.74 0.064735
Target:  5'- uGuuGGCCGcGCUGCUuggcaUGGCGGCCGg- -3'
miRNA:   3'- gCggCCGGC-CGACGA-----GCUGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 21571 0.66 0.248913
Target:  5'- gGCCGcGCgGGC-GUUCGACGcGCaGCGg -3'
miRNA:   3'- gCGGC-CGgCCGaCGAGCUGC-CGgCGU- -5'
24862 5' -65.8 NC_005284.1 + 21746 0.69 0.142286
Target:  5'- aGCCuGCgGGCUGCUCuugccgcuggcacuGAgCGGCUGCGc -3'
miRNA:   3'- gCGGcCGgCCGACGAG--------------CU-GCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 22071 0.66 0.231423
Target:  5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3'
miRNA:   3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.