miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24862 5' -65.8 NC_005284.1 + 53780 0.7 0.129255
Target:  5'- uGCUGauGCCGGCUGCUgCGGCGaG-CGCAu -3'
miRNA:   3'- gCGGC--CGGCCGACGA-GCUGC-CgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 49327 0.67 0.225827
Target:  5'- aGCC-GCCGGCuUGCUCGACuaaUGCAc -3'
miRNA:   3'- gCGGcCGGCCG-ACGAGCUGccgGCGU- -5'
24862 5' -65.8 NC_005284.1 + 47734 0.7 0.119509
Target:  5'- gGCCGuGCuCGGCgGUaCGGCGGCgCGCGu -3'
miRNA:   3'- gCGGC-CG-GCCGaCGaGCUGCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 47538 0.66 0.245329
Target:  5'- uGCCGaCCGuGCgcuccgcauugaagcUGCUCGACuGCUGCAu -3'
miRNA:   3'- gCGGCcGGC-CG---------------ACGAGCUGcCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 46479 0.68 0.167259
Target:  5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3'
miRNA:   3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5'
24862 5' -65.8 NC_005284.1 + 46181 0.68 0.180027
Target:  5'- aGCCGGCCGucgacgagagaccGC-GCaugCGGCGGUCGUAu -3'
miRNA:   3'- gCGGCCGGC-------------CGaCGa--GCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 45645 0.7 0.132664
Target:  5'- gGCaGGCUGGCgGCUCGuCGGUgCGCGa -3'
miRNA:   3'- gCGgCCGGCCGaCGAGCuGCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 43603 0.67 0.225827
Target:  5'- uCGaaGGCUuGCUuuccGCgcgCGGCGGCCGCGg -3'
miRNA:   3'- -GCggCCGGcCGA----CGa--GCUGCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 42941 0.66 0.240618
Target:  5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3'
miRNA:   3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 39514 0.72 0.091758
Target:  5'- uCGUCGGUCGGCUGUgcCGAUGcGCCGgGa -3'
miRNA:   3'- -GCGGCCGGCCGACGa-GCUGC-CGGCgU- -5'
24862 5' -65.8 NC_005284.1 + 39500 0.66 0.248913
Target:  5'- gGCgCGGuuGGUcagugcauguggUGCUCGccGCGGCCGa- -3'
miRNA:   3'- gCG-GCCggCCG------------ACGAGC--UGCCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 38110 0.81 0.019379
Target:  5'- aCGCCGacGCCGGCcucacGCUCGACGGCCGgAa -3'
miRNA:   3'- -GCGGC--CGGCCGa----CGAGCUGCCGGCgU- -5'
24862 5' -65.8 NC_005284.1 + 37425 0.71 0.113396
Target:  5'- aGCCGGCCGGgacGUuaUCGcagcCGGCCGCGa -3'
miRNA:   3'- gCGGCCGGCCga-CG--AGCu---GCCGGCGU- -5'
24862 5' -65.8 NC_005284.1 + 35839 0.68 0.18933
Target:  5'- uCGCCGGCCaucGGCgggGUgauuaggUCGAuCGGCgCGCGc -3'
miRNA:   3'- -GCGGCCGG---CCGa--CG-------AGCU-GCCG-GCGU- -5'
24862 5' -65.8 NC_005284.1 + 34055 0.67 0.199549
Target:  5'- uCGCUGGCUucGCgGCUCGGaaauacgccuCGGCCGCc -3'
miRNA:   3'- -GCGGCCGGc-CGaCGAGCU----------GCCGGCGu -5'
24862 5' -65.8 NC_005284.1 + 33964 0.73 0.076914
Target:  5'- uCGUCGGCCGGCgcugcugcgggcUGCUCGACagggggugcggcgagGGCCGa- -3'
miRNA:   3'- -GCGGCCGGCCG------------ACGAGCUG---------------CCGGCgu -5'
24862 5' -65.8 NC_005284.1 + 33584 0.69 0.141186
Target:  5'- aGCCGGgcgugcacgucaggaCCGGCuccgcgUGCUCGAUGaGCCGUu -3'
miRNA:   3'- gCGGCC---------------GGCCG------ACGAGCUGC-CGGCGu -5'
24862 5' -65.8 NC_005284.1 + 33374 0.79 0.024851
Target:  5'- uCGUCGGCCGGCgcUGC-CGACGGCuCGCc -3'
miRNA:   3'- -GCGGCCGGCCG--ACGaGCUGCCG-GCGu -5'
24862 5' -65.8 NC_005284.1 + 33228 0.66 0.248913
Target:  5'- aCGCCcGCgCGGcCUGCUCGuCGGCaaGCc -3'
miRNA:   3'- -GCGGcCG-GCC-GACGAGCuGCCGg-CGu -5'
24862 5' -65.8 NC_005284.1 + 32511 0.66 0.237135
Target:  5'- uGCCucgcGCUGGCUGUUCGucaGGCuCGCc -3'
miRNA:   3'- gCGGc---CGGCCGACGAGCug-CCG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.