Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 30678 | 0.74 | 0.066328 |
Target: 5'- aGCCGGCCGGCgGCUuucuugcCGACGcGCUcuGCAu -3' miRNA: 3'- gCGGCCGGCCGaCGA-------GCUGC-CGG--CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 29110 | 0.66 | 0.242964 |
Target: 5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3' miRNA: 3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 27958 | 0.67 | 0.21498 |
Target: 5'- gGUCGGCCGGCauacGCUCGAgcaacgcaUGGCucucgagauCGCAu -3' miRNA: 3'- gCGGCCGGCCGa---CGAGCU--------GCCG---------GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 24329 | 0.72 | 0.084475 |
Target: 5'- aCGCCGGCCGGCaGCacacgaaUCGGCGaCuCGCGa -3' miRNA: 3'- -GCGGCCGGCCGaCG-------AGCUGCcG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 24122 | 1.07 | 0.000147 |
Target: 5'- cCGCCGGCCGGCUGCUCGACGGCCGCAc -3' miRNA: 3'- -GCGGCCGGCCGACGAGCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 23325 | 0.68 | 0.170698 |
Target: 5'- cCGgCGGCaCGGCggucaauuggggGCcCGGCGcGCCGCAg -3' miRNA: 3'- -GCgGCCG-GCCGa-----------CGaGCUGC-CGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 22071 | 0.66 | 0.231423 |
Target: 5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3' miRNA: 3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 21746 | 0.69 | 0.142286 |
Target: 5'- aGCCuGCgGGCUGCUCuugccgcuggcacuGAgCGGCUGCGc -3' miRNA: 3'- gCGGcCGgCCGACGAG--------------CU-GCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 21571 | 0.66 | 0.248913 |
Target: 5'- gGCCGcGCgGGC-GUUCGACGcGCaGCGg -3' miRNA: 3'- gCGGC-CGgCCGaCGAGCUGC-CGgCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 21492 | 0.74 | 0.064735 |
Target: 5'- uGuuGGCCGcGCUGCUuggcaUGGCGGCCGg- -3' miRNA: 3'- gCggCCGGC-CGACGA-----GCUGCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 20835 | 0.67 | 0.204583 |
Target: 5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3' miRNA: 3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 19027 | 0.67 | 0.209726 |
Target: 5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3' miRNA: 3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 17874 | 0.71 | 0.104773 |
Target: 5'- aGaaGGCCGGCcGCcggaUCGGCGGgCGCAu -3' miRNA: 3'- gCggCCGGCCGaCG----AGCUGCCgGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 17355 | 0.7 | 0.132664 |
Target: 5'- uCG-CGGCCGGCUGCgauaaCGuccCGGCCGg- -3' miRNA: 3'- -GCgGCCGGCCGACGa----GCu--GCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 16882 | 0.73 | 0.080287 |
Target: 5'- uGCUGGCCGGUgcGUUCGACGGCaagacgacguCGCu -3' miRNA: 3'- gCGGCCGGCCGa-CGAGCUGCCG----------GCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 16681 | 0.68 | 0.167259 |
Target: 5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3' miRNA: 3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 15960 | 0.66 | 0.26117 |
Target: 5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3' miRNA: 3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 15681 | 0.67 | 0.209726 |
Target: 5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3' miRNA: 3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 14249 | 0.67 | 0.225827 |
Target: 5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3' miRNA: 3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 13603 | 0.66 | 0.26117 |
Target: 5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3' miRNA: 3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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