Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 33228 | 0.66 | 0.248913 |
Target: 5'- aCGCCcGCgCGGcCUGCUCGuCGGCaaGCc -3' miRNA: 3'- -GCGGcCG-GCC-GACGAGCuGCCGg-CGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 39514 | 0.72 | 0.091758 |
Target: 5'- uCGUCGGUCGGCUGUgcCGAUGcGCCGgGa -3' miRNA: 3'- -GCGGCCGGCCGACGa-GCUGC-CGGCgU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 38110 | 0.81 | 0.019379 |
Target: 5'- aCGCCGacGCCGGCcucacGCUCGACGGCCGgAa -3' miRNA: 3'- -GCGGC--CGGCCGa----CGAGCUGCCGGCgU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 24122 | 1.07 | 0.000147 |
Target: 5'- cCGCCGGCCGGCUGCUCGACGGCCGCAc -3' miRNA: 3'- -GCGGCCGGCCGACGAGCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 43603 | 0.67 | 0.225827 |
Target: 5'- uCGaaGGCUuGCUuuccGCgcgCGGCGGCCGCGg -3' miRNA: 3'- -GCggCCGGcCGA----CGa--GCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 49327 | 0.67 | 0.225827 |
Target: 5'- aGCC-GCCGGCuUGCUCGACuaaUGCAc -3' miRNA: 3'- gCGGcCGGCCG-ACGAGCUGccgGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 19027 | 0.67 | 0.209726 |
Target: 5'- cCGCCGGCaCGaaGCUGaucaUCGACGGCgacgagaacaGCAu -3' miRNA: 3'- -GCGGCCG-GC--CGACg---AGCUGCCGg---------CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 15681 | 0.67 | 0.209726 |
Target: 5'- aCGCUGGCCuuCUGUcCuuCGGCCGCAu -3' miRNA: 3'- -GCGGCCGGccGACGaGcuGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 35839 | 0.68 | 0.18933 |
Target: 5'- uCGCCGGCCaucGGCgggGUgauuaggUCGAuCGGCgCGCGc -3' miRNA: 3'- -GCGGCCGG---CCGa--CG-------AGCU-GCCG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 17355 | 0.7 | 0.132664 |
Target: 5'- uCG-CGGCCGGCUGCgauaaCGuccCGGCCGg- -3' miRNA: 3'- -GCgGCCGGCCGACGa----GCu--GCCGGCgu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 46181 | 0.68 | 0.180027 |
Target: 5'- aGCCGGCCGucgacgagagaccGC-GCaugCGGCGGUCGUAu -3' miRNA: 3'- gCGGCCGGC-------------CGaCGa--GCUGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 12762 | 0.68 | 0.189806 |
Target: 5'- cCGCuCGGCCGGCacgcGCUCGcgaagauacGCuGUCGCAc -3' miRNA: 3'- -GCG-GCCGGCCGa---CGAGC---------UGcCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 29110 | 0.66 | 0.242964 |
Target: 5'- aCGCagaGGCuUGGCUcGCgCGaACGGCUGCGc -3' miRNA: 3'- -GCGg--CCG-GCCGA-CGaGC-UGCCGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 23325 | 0.68 | 0.170698 |
Target: 5'- cCGgCGGCaCGGCggucaauuggggGCcCGGCGcGCCGCAg -3' miRNA: 3'- -GCgGCCG-GCCGa-----------CGaGCUGC-CGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 42941 | 0.66 | 0.240618 |
Target: 5'- aGUCGGCCugcaacgcgagccGCUGCUCGAgauaGCCGCGc -3' miRNA: 3'- gCGGCCGGc------------CGACGAGCUgc--CGGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 20835 | 0.67 | 0.204583 |
Target: 5'- gCGCCGGCCGaCgaGCgggCGGCGcuuCCGCAa -3' miRNA: 3'- -GCGGCCGGCcGa-CGa--GCUGCc--GGCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 33584 | 0.69 | 0.141186 |
Target: 5'- aGCCGGgcgugcacgucaggaCCGGCuccgcgUGCUCGAUGaGCCGUu -3' miRNA: 3'- gCGGCC---------------GGCCG------ACGAGCUGC-CGGCGu -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 24329 | 0.72 | 0.084475 |
Target: 5'- aCGCCGGCCGGCaGCacacgaaUCGGCGaCuCGCGa -3' miRNA: 3'- -GCGGCCGGCCGaCG-------AGCUGCcG-GCGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 22071 | 0.66 | 0.231423 |
Target: 5'- gGCuaugCGGCCGGaCUGCgCGACGGaaaaGCGc -3' miRNA: 3'- gCG----GCCGGCC-GACGaGCUGCCgg--CGU- -5' |
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24862 | 5' | -65.8 | NC_005284.1 | + | 27958 | 0.67 | 0.21498 |
Target: 5'- gGUCGGCCGGCauacGCUCGAgcaacgcaUGGCucucgagauCGCAu -3' miRNA: 3'- gCGGCCGGCCGa---CGAGCU--------GCCG---------GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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