Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 39514 | 0.72 | 0.091758 |
Target: 5'- uCGUCGGUCGGCUGUgcCGAUGcGCCGgGa -3' miRNA: 3'- -GCGGCCGGCCGACGa-GCUGC-CGGCgU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 16882 | 0.73 | 0.080287 |
Target: 5'- uGCUGGCCGGUgcGUUCGACGGCaagacgacguCGCu -3' miRNA: 3'- gCGGCCGGCCGa-CGAGCUGCCG----------GCGu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 4922 | 0.72 | 0.091758 |
Target: 5'- gCGCCGGCa--CUGCaaucguauaUCGACGGCCGUg -3' miRNA: 3'- -GCGGCCGgccGACG---------AGCUGCCGGCGu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 30678 | 0.74 | 0.066328 |
Target: 5'- aGCCGGCCGGCgGCUuucuugcCGACGcGCUcuGCAu -3' miRNA: 3'- gCGGCCGGCCGaCGA-------GCUGC-CGG--CGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 4170 | 0.71 | 0.104496 |
Target: 5'- --aUGGCgaacgacgugaauCGGCUGCUCGACGGCCuCAa -3' miRNA: 3'- gcgGCCG-------------GCCGACGAGCUGCCGGcGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 37425 | 0.71 | 0.113396 |
Target: 5'- aGCCGGCCGGgacGUuaUCGcagcCGGCCGCGa -3' miRNA: 3'- gCGGCCGGCCga-CG--AGCu---GCCGGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 47734 | 0.7 | 0.119509 |
Target: 5'- gGCCGuGCuCGGCgGUaCGGCGGCgCGCGu -3' miRNA: 3'- gCGGC-CG-GCCGaCGaGCUGCCG-GCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 53780 | 0.7 | 0.129255 |
Target: 5'- uGCUGauGCCGGCUGCUgCGGCGaG-CGCAu -3' miRNA: 3'- gCGGC--CGGCCGACGA-GCUGC-CgGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 45645 | 0.7 | 0.132664 |
Target: 5'- gGCaGGCUGGCgGCUCGuCGGUgCGCGa -3' miRNA: 3'- gCGgCCGGCCGaCGAGCuGCCG-GCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 21746 | 0.69 | 0.142286 |
Target: 5'- aGCCuGCgGGCUGCUCuugccgcuggcacuGAgCGGCUGCGc -3' miRNA: 3'- gCGGcCGgCCGACGAG--------------CU-GCCGGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 8619 | 0.67 | 0.209726 |
Target: 5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3' miRNA: 3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 14249 | 0.67 | 0.225827 |
Target: 5'- uGuuGGCCgGGUUGCUUgaGACGGauGCGg -3' miRNA: 3'- gCggCCGG-CCGACGAG--CUGCCggCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 32511 | 0.66 | 0.237135 |
Target: 5'- uGCCucgcGCUGGCUGUUCGucaGGCuCGCc -3' miRNA: 3'- gCGGc---CGGCCGACGAGCug-CCG-GCGu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 46479 | 0.68 | 0.167259 |
Target: 5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3' miRNA: 3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 21571 | 0.66 | 0.248913 |
Target: 5'- gGCCGcGCgGGC-GUUCGACGcGCaGCGg -3' miRNA: 3'- gCGGC-CGgCCGaCGAGCUGC-CGgCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 39500 | 0.66 | 0.248913 |
Target: 5'- gGCgCGGuuGGUcagugcauguggUGCUCGccGCGGCCGa- -3' miRNA: 3'- gCG-GCCggCCG------------ACGAGC--UGCCGGCgu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 13603 | 0.66 | 0.26117 |
Target: 5'- gGCUGGCCaGCU-CggggCGACGGUCGaCGg -3' miRNA: 3'- gCGGCCGGcCGAcGa---GCUGCCGGC-GU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 15960 | 0.66 | 0.26117 |
Target: 5'- aCGCCGGCCcacguucGCcgUGUUCaACGGCCGg- -3' miRNA: 3'- -GCGGCCGGc------CG--ACGAGcUGCCGGCgu -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 47538 | 0.66 | 0.245329 |
Target: 5'- uGCCGaCCGuGCgcuccgcauugaagcUGCUCGACuGCUGCAu -3' miRNA: 3'- gCGGCcGGC-CG---------------ACGAGCUGcCGGCGU- -5' |
|||||||
24862 | 5' | -65.8 | NC_005284.1 | + | 16681 | 0.68 | 0.167259 |
Target: 5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3' miRNA: 3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home