Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24862 | 5' | -65.8 | NC_005284.1 | + | 8619 | 0.67 | 0.209726 |
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Target: 5'- uCGaCGGCCGGCucguauuucaaUGCggugcgCGACGGCgggCGCAc -3' miRNA: 3'- -GCgGCCGGCCG-----------ACGa-----GCUGCCG---GCGU- -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 34055 | 0.67 | 0.199549 |
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Target: 5'- uCGCUGGCUucGCgGCUCGGaaauacgccuCGGCCGCc -3' miRNA: 3'- -GCGGCCGGc-CGaCGAGCU----------GCCGGCGu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 7011 | 0.68 | 0.189806 |
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Target: 5'- gCGCUcGCCgGGCUGaCU-GGCGGCCGUu -3' miRNA: 3'- -GCGGcCGG-CCGAC-GAgCUGCCGGCGu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 46479 | 0.68 | 0.167259 |
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Target: 5'- aCGCUGGCguuaGCUGCUCGugcAUGGCCGaCGc -3' miRNA: 3'- -GCGGCCGgc--CGACGAGC---UGCCGGC-GU- -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 16681 | 0.68 | 0.167259 |
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Target: 5'- aGCgugaGGCCGGCg--UCGGCGuGCCGCu -3' miRNA: 3'- gCGg---CCGGCCGacgAGCUGC-CGGCGu -5' |
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| 24862 | 5' | -65.8 | NC_005284.1 | + | 33374 | 0.79 | 0.024851 |
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Target: 5'- uCGUCGGCCGGCgcUGC-CGACGGCuCGCc -3' miRNA: 3'- -GCGGCCGGCCG--ACGaGCUGCCG-GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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