Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24863 | 5' | -58.7 | NC_005284.1 | + | 35869 | 0.66 | 0.511136 |
Target: 5'- -aCGCUguacACCUGGCCGUcgUGGAcgUCGAUc -3' miRNA: 3'- gaGCGGa---UGGGCCGGCG--ACCU--AGUUA- -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 32950 | 0.67 | 0.441124 |
Target: 5'- aUCGCCcACgCCGGCggCGCUGGAa---- -3' miRNA: 3'- gAGCGGaUG-GGCCG--GCGACCUaguua -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 54090 | 0.67 | 0.422131 |
Target: 5'- --aGCUUucGCUCGGCCGCcuccGGAUCGAa -3' miRNA: 3'- gagCGGA--UGGGCCGGCGa---CCUAGUUa -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 38046 | 0.69 | 0.343109 |
Target: 5'- aUUGCC-AUCUGGaUCGCUGGAUCAc- -3' miRNA: 3'- gAGCGGaUGGGCC-GGCGACCUAGUua -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 17855 | 0.7 | 0.296651 |
Target: 5'- aUCGCCguugccgACCCaaagaaggccGGCCGCcGGAUCGGc -3' miRNA: 3'- gAGCGGa------UGGG----------CCGGCGaCCUAGUUa -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 30150 | 0.7 | 0.296651 |
Target: 5'- -cCGCCUucGCCCGGCCcCUGaGUCGAc -3' miRNA: 3'- gaGCGGA--UGGGCCGGcGACcUAGUUa -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 915 | 0.74 | 0.146441 |
Target: 5'- -cCGCCgcauCCCGGCCGCUGuGcUCGAUg -3' miRNA: 3'- gaGCGGau--GGGCCGGCGAC-CuAGUUA- -5' |
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24863 | 5' | -58.7 | NC_005284.1 | + | 24031 | 1.05 | 0.000818 |
Target: 5'- gCUCGCCUACCCGGCCGCUGGAUCAAUc -3' miRNA: 3'- -GAGCGGAUGGGCCGGCGACCUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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