miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 3' -50.7 NC_005284.1 + 16566 0.66 0.929383
Target:  5'- --cUCGACGGCACgc-CGAUCCagaacGCGg -3'
miRNA:   3'- aaaAGCUGUUGUGacaGCUAGGc----CGC- -5'
24864 3' -50.7 NC_005284.1 + 49425 0.66 0.929383
Target:  5'- -aUUCGACGAaa---UCGcAUCCGGCGa -3'
miRNA:   3'- aaAAGCUGUUgugacAGC-UAGGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 25397 0.66 0.923437
Target:  5'- ---cCGACGACGaaacaaggcUUGUCGAgcgaCUGGCGg -3'
miRNA:   3'- aaaaGCUGUUGU---------GACAGCUa---GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 20853 0.66 0.923437
Target:  5'- --aUCGGCGugAUcGUCGGUauucucaCGGCGa -3'
miRNA:   3'- aaaAGCUGUugUGaCAGCUAg------GCCGC- -5'
24864 3' -50.7 NC_005284.1 + 44123 0.66 0.917196
Target:  5'- ---aCGACAaguGCGCUGUgaCGAUCgaGGCa -3'
miRNA:   3'- aaaaGCUGU---UGUGACA--GCUAGg-CCGc -5'
24864 3' -50.7 NC_005284.1 + 47815 0.66 0.91066
Target:  5'- --cUUGGCGGCGCUG-CGAUgggugcUCGGCa -3'
miRNA:   3'- aaaAGCUGUUGUGACaGCUA------GGCCGc -5'
24864 3' -50.7 NC_005284.1 + 31315 0.66 0.90383
Target:  5'- --aUCGACAGugUUGUCGAaaacgUCGGCGa -3'
miRNA:   3'- aaaAGCUGUUguGACAGCUa----GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 16728 0.67 0.896712
Target:  5'- --aUCGGCAcgAUGCUGU-GAUCCaGCGa -3'
miRNA:   3'- aaaAGCUGU--UGUGACAgCUAGGcCGC- -5'
24864 3' -50.7 NC_005284.1 + 31961 0.67 0.872851
Target:  5'- --aUCGGC-ACGCUcUCGAUauggaaaCCGGCGa -3'
miRNA:   3'- aaaAGCUGuUGUGAcAGCUA-------GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 48395 0.67 0.865434
Target:  5'- -aUUCGGCAGCACugcagcaaUGUCGuauaGGCGa -3'
miRNA:   3'- aaAAGCUGUUGUG--------ACAGCuaggCCGC- -5'
24864 3' -50.7 NC_005284.1 + 29705 0.68 0.856946
Target:  5'- ---gUGACGAuCGCgagGUCGG-CCGGCGu -3'
miRNA:   3'- aaaaGCUGUU-GUGa--CAGCUaGGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 9503 0.68 0.848206
Target:  5'- ---gCGACAGCGuggGUCGGcgcCCGGCGa -3'
miRNA:   3'- aaaaGCUGUUGUga-CAGCUa--GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 4766 0.68 0.839223
Target:  5'- --aUCGAguACACcGUCGAaaCCGGCu -3'
miRNA:   3'- aaaAGCUguUGUGaCAGCUa-GGCCGc -5'
24864 3' -50.7 NC_005284.1 + 41336 0.68 0.839223
Target:  5'- -cUUCGGCGGCGCguaucagGUC-AUCUGGCc -3'
miRNA:   3'- aaAAGCUGUUGUGa------CAGcUAGGCCGc -5'
24864 3' -50.7 NC_005284.1 + 26925 0.68 0.820567
Target:  5'- aUUUCGGCGAUGCgccgggcgggcGUCG-UCUGGCGa -3'
miRNA:   3'- aAAAGCUGUUGUGa----------CAGCuAGGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 4418 0.69 0.810915
Target:  5'- --gUCGACGA-GCUGUUGAUCaagcagGGCGa -3'
miRNA:   3'- aaaAGCUGUUgUGACAGCUAGg-----CCGC- -5'
24864 3' -50.7 NC_005284.1 + 33758 0.69 0.801063
Target:  5'- --gUCG-CGACAuuCUGUCGAagugcgCCGGCGc -3'
miRNA:   3'- aaaAGCuGUUGU--GACAGCUa-----GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 21008 0.69 0.791021
Target:  5'- --aUCGACuACGaaGUCGGcgCCGGCGc -3'
miRNA:   3'- aaaAGCUGuUGUgaCAGCUa-GGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 7356 0.69 0.790007
Target:  5'- --gUCGACcgaucucGACGCgGcCGAUCUGGCGu -3'
miRNA:   3'- aaaAGCUG-------UUGUGaCaGCUAGGCCGC- -5'
24864 3' -50.7 NC_005284.1 + 32867 0.69 0.780801
Target:  5'- --gUCGAUcucGCGCUGaUCGucgCCGGCGa -3'
miRNA:   3'- aaaAGCUGu--UGUGAC-AGCua-GGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.