miRNA: 3'- aaaaGCUGU---UGUGACA--GCUAGg-CCGc -5'
miRNA: 3'- aaaaGCUGUUGU---------GACAGCUa---GGCCGC- -5'
miRNA: 3'- aaaAGCUGUugUGaCAGCUAg------GCCGC- -5'
miRNA: 3'- aaAAGCUGUUgugacAGC-UAGGCCGC- -5'
miRNA: 3'- aaaAGCUGUUGUGacaGCUAGGc----CGC- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24864 | 3' | -50.7 | NC_005284.1 | + | 44123 | 0.66 | 0.917196 |
|
Target: 5'- ---aCGACAaguGCGCUGUgaCGAUCgaGGCa -3' miRNA: 3'- aaaaGCUGU---UGUGACA--GCUAGg-CCGc -5' |
|||||||
| 24864 | 3' | -50.7 | NC_005284.1 | + | 25397 | 0.66 | 0.923437 |
|
Target: 5'- ---cCGACGACGaaacaaggcUUGUCGAgcgaCUGGCGg -3' miRNA: 3'- aaaaGCUGUUGU---------GACAGCUa---GGCCGC- -5' |
|||||||
| 24864 | 3' | -50.7 | NC_005284.1 | + | 20853 | 0.66 | 0.923437 |
|
Target: 5'- --aUCGGCGugAUcGUCGGUauucucaCGGCGa -3' miRNA: 3'- aaaAGCUGUugUGaCAGCUAg------GCCGC- -5' |
|||||||
| 24864 | 3' | -50.7 | NC_005284.1 | + | 49425 | 0.66 | 0.929383 |
|
Target: 5'- -aUUCGACGAaa---UCGcAUCCGGCGa -3' miRNA: 3'- aaAAGCUGUUgugacAGC-UAGGCCGC- -5' |
|||||||
| 24864 | 3' | -50.7 | NC_005284.1 | + | 16566 | 0.66 | 0.929383 |
|
Target: 5'- --cUCGACGGCACgc-CGAUCCagaacGCGg -3' miRNA: 3'- aaaAGCUGUUGUGacaGCUAGGc----CGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home