miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 468 0.66 0.686018
Target:  5'- -gCGCCUGGUCGgCG-CAaaGCCGAAa -3'
miRNA:   3'- agGCGGACUAGCgGCuGUg-CGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 46782 0.66 0.686018
Target:  5'- aUUCGCCUGcaugugcgcGUCGUCacucGCGCGCgCGAACu -3'
miRNA:   3'- -AGGCGGAC---------UAGCGGc---UGUGCG-GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 5153 0.66 0.686018
Target:  5'- aCCGUCgGAacgcCGCUGACGCGCgaucagcuCAAACg -3'
miRNA:   3'- aGGCGGaCUa---GCGGCUGUGCG--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 31472 0.66 0.682765
Target:  5'- aCCGCCgugcCGCCGgaaaagcgcgcauuGCGCGCCucGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGC--------------UGUGCGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 19006 0.66 0.676248
Target:  5'- gCCGCCUGuuucagcucuacgcCGCCGGCACG--AAGCu -3'
miRNA:   3'- aGGCGGACua------------GCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44109 0.66 0.67516
Target:  5'- cCCGCCgugucGAUCGCgcccgCGGCGCGCa---- -3'
miRNA:   3'- aGGCGGa----CUAGCG-----GCUGUGCGguuug -5'
24864 5' -56.2 NC_005284.1 + 28756 0.66 0.664261
Target:  5'- aUCCGg--GGUCGCCGACAUcgaGCCccGGCa -3'
miRNA:   3'- -AGGCggaCUAGCGGCUGUG---CGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 15095 0.66 0.664261
Target:  5'- gCCGUCUGccUCG-CGGCGCGCUugucGAGCa -3'
miRNA:   3'- aGGCGGACu-AGCgGCUGUGCGG----UUUG- -5'
24864 5' -56.2 NC_005284.1 + 38255 0.66 0.664261
Target:  5'- aUUGuCCUGGUgcCGCCaGCGCGCCcGGCa -3'
miRNA:   3'- aGGC-GGACUA--GCGGcUGUGCGGuUUG- -5'
24864 5' -56.2 NC_005284.1 + 20488 0.66 0.653333
Target:  5'- gCCGCgCUGAUgCGCUGACG-GaCGAGCa -3'
miRNA:   3'- aGGCG-GACUA-GCGGCUGUgCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 9639 0.66 0.642386
Target:  5'- gUCGCCgug-CGUCGAcCACGCCuuGCc -3'
miRNA:   3'- aGGCGGacuaGCGGCU-GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 5398 0.66 0.642386
Target:  5'- gCUGCUUGccCGUgCGGCGCGCCAGcucGCg -3'
miRNA:   3'- aGGCGGACuaGCG-GCUGUGCGGUU---UG- -5'
24864 5' -56.2 NC_005284.1 + 2431 0.66 0.631429
Target:  5'- gUCCGUCUGAUCGCgGAaacaauCGC--GACu -3'
miRNA:   3'- -AGGCGGACUAGCGgCUgu----GCGguUUG- -5'
24864 5' -56.2 NC_005284.1 + 31586 0.66 0.631429
Target:  5'- aCCGCCc-GUCGUCGACGCaGCU--GCa -3'
miRNA:   3'- aGGCGGacUAGCGGCUGUG-CGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 44706 0.66 0.631429
Target:  5'- cCCGCCgcggucgcGGUCGCCG-CGCGUUccGCu -3'
miRNA:   3'- aGGCGGa-------CUAGCGGCuGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 45255 0.66 0.631429
Target:  5'- gUUGCUUGAUCGUcuccuCGACGagcgcuCGCCGGGCg -3'
miRNA:   3'- aGGCGGACUAGCG-----GCUGU------GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 52475 0.66 0.631429
Target:  5'- cCCGUC-GGUCaGCgaaaugGGCACGCCAAGCc -3'
miRNA:   3'- aGGCGGaCUAG-CGg-----CUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 41411 0.66 0.628141
Target:  5'- aCCGCCgcagacaGAUCGCCGcccaccgucagcuuGC-CGCCGAc- -3'
miRNA:   3'- aGGCGGa------CUAGCGGC--------------UGuGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 3824 0.67 0.620473
Target:  5'- aUCUGUg-GAUCGaCGAaGCGCCGAACg -3'
miRNA:   3'- -AGGCGgaCUAGCgGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 15933 0.67 0.620473
Target:  5'- uUCCGgcguuCCUGA-CGUCGGCGCGCgAcGCc -3'
miRNA:   3'- -AGGC-----GGACUaGCGGCUGUGCGgUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.