Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 40191 | 0.7 | 0.442272 |
Target: 5'- -gCGCCgGAacacuuucgCGCCGACGagauCGCCAAGCg -3' miRNA: 3'- agGCGGaCUa--------GCGGCUGU----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 41358 | 0.7 | 0.423117 |
Target: 5'- aUCUgGCCUgcgGAUCGCCGAgaCACGCCc-GCg -3' miRNA: 3'- -AGG-CGGA---CUAGCGGCU--GUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 6835 | 0.7 | 0.423117 |
Target: 5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3' miRNA: 3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40864 | 0.7 | 0.423117 |
Target: 5'- -aCGCCUGGUuaaaauucgaCGCagacaACACGCCAAACg -3' miRNA: 3'- agGCGGACUA----------GCGgc---UGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 26904 | 0.7 | 0.412795 |
Target: 5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3' miRNA: 3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31486 | 0.69 | 0.492194 |
Target: 5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3' miRNA: 3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33441 | 0.69 | 0.492194 |
Target: 5'- gUCCGaCUcguUGAUCGCgCGACACGCg---- -3' miRNA: 3'- -AGGC-GG---ACUAGCG-GCUGUGCGguuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 42348 | 0.69 | 0.492194 |
Target: 5'- aUCCGCCcucGAUCGaaaCUGGCGCGCUGAc- -3' miRNA: 3'- -AGGCGGa--CUAGC---GGCUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16703 | 0.69 | 0.452032 |
Target: 5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3' miRNA: 3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33365 | 0.69 | 0.502492 |
Target: 5'- aCCGCCcGuucGUCgGCCGGCGCuGCCGAcgGCu -3' miRNA: 3'- aGGCGGaC---UAG-CGGCUGUG-CGGUU--UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36286 | 0.69 | 0.461908 |
Target: 5'- -aCGCCgGaAUCGaCGuCACGCCGAGCg -3' miRNA: 3'- agGCGGaC-UAGCgGCuGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36834 | 0.69 | 0.502492 |
Target: 5'- aUCGCCgugaagcGAUCGCCGGCggcgauugucgGCGCCuugucGAGCg -3' miRNA: 3'- aGGCGGa------CUAGCGGCUG-----------UGCGG-----UUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 14583 | 0.68 | 0.520211 |
Target: 5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3' miRNA: 3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 49374 | 0.68 | 0.533923 |
Target: 5'- cUUCGCC-GAgcgcgaGCUGGCGCGCCGcACg -3' miRNA: 3'- -AGGCGGaCUag----CGGCUGUGCGGUuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 29715 | 0.68 | 0.55526 |
Target: 5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3' miRNA: 3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 44853 | 0.68 | 0.55526 |
Target: 5'- gCCGCCUcaagCGCCG-UACGCCGc-- -3' miRNA: 3'- aGGCGGAcua-GCGGCuGUGCGGUuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40676 | 0.67 | 0.566024 |
Target: 5'- gCCGuCCUcaucGAUCuCCGGCcccuCGCCGAGCa -3' miRNA: 3'- aGGC-GGA----CUAGcGGCUGu---GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 27701 | 0.67 | 0.57684 |
Target: 5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3' miRNA: 3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 18564 | 0.67 | 0.57684 |
Target: 5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3' miRNA: 3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 10549 | 0.67 | 0.5986 |
Target: 5'- gCCgGCCUgGAUCGCCucaAgACGUCGAACc -3' miRNA: 3'- aGG-CGGA-CUAGCGGc--UgUGCGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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