miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 23519 1.09 0.000808
Target:  5'- uUCCGCCUGAUCGCCGACACGCCAAACc -3'
miRNA:   3'- -AGGCGGACUAGCGGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 32873 0.76 0.171594
Target:  5'- cUCGCgCUGAucgUCGCCGGCgACGCCGAAa -3'
miRNA:   3'- aGGCG-GACU---AGCGGCUG-UGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 42720 0.76 0.171594
Target:  5'- cUCCGaacaCCUGAgacaUCGCCGcACGCGCCGAAa -3'
miRNA:   3'- -AGGC----GGACU----AGCGGC-UGUGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 44280 0.76 0.180625
Target:  5'- gCUGCCUGAUCGgcauccgagaccaCCGACGgcgcauCGCCAAACg -3'
miRNA:   3'- aGGCGGACUAGC-------------GGCUGU------GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 42920 0.76 0.181112
Target:  5'- cCCGCUUca-CGCCGACGCGCCAGu- -3'
miRNA:   3'- aGGCGGAcuaGCGGCUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 16970 0.76 0.186044
Target:  5'- aUCCGCgUG--CGCCGcauCACGCCGAACg -3'
miRNA:   3'- -AGGCGgACuaGCGGCu--GUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 17700 0.76 0.191095
Target:  5'- -aCGcCCUGAaucUCGCCGGCGCGUCGAugGCg -3'
miRNA:   3'- agGC-GGACU---AGCGGCUGUGCGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 38609 0.75 0.212513
Target:  5'- gCCGCCcag-CGCCaucGACGCGCCGAGCc -3'
miRNA:   3'- aGGCGGacuaGCGG---CUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 45353 0.75 0.218181
Target:  5'- aUCCGCCcGGcCGCgagCGACACGCCGAGu -3'
miRNA:   3'- -AGGCGGaCUaGCG---GCUGUGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 46345 0.75 0.218181
Target:  5'- cUCCGCC--GUCGCgGGCuCGCCGGACc -3'
miRNA:   3'- -AGGCGGacUAGCGgCUGuGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 40131 0.74 0.247844
Target:  5'- gUCCGCCgucgGAUUGCCGGCcggaaaauucacgGCGUCGAGg -3'
miRNA:   3'- -AGGCGGa---CUAGCGGCUG-------------UGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 46448 0.72 0.304086
Target:  5'- aUCGCC--GUCGCCGAaugcCGCCGAGCg -3'
miRNA:   3'- aGGCGGacUAGCGGCUgu--GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44162 0.72 0.304086
Target:  5'- gCCGCCgcucGUCGCCGACACG--AAGCg -3'
miRNA:   3'- aGGCGGac--UAGCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 18789 0.71 0.351746
Target:  5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3'
miRNA:   3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 35361 0.71 0.367903
Target:  5'- cCCGCCUugcacaacgaacgGcgCGCCGAuCACGCCu-GCa -3'
miRNA:   3'- aGGCGGA-------------CuaGCGGCU-GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 180 0.71 0.377488
Target:  5'- gCCGCCggacugGAUUGUCGGCgagGCGCgGGGCa -3'
miRNA:   3'- aGGCGGa-----CUAGCGGCUG---UGCGgUUUG- -5'
24864 5' -56.2 NC_005284.1 + 3888 0.7 0.39534
Target:  5'- cUCCGCUcucgaUGAaugCGCCGAgCACGcCCGAAUg -3'
miRNA:   3'- -AGGCGG-----ACUa--GCGGCU-GUGC-GGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 26904 0.7 0.412795
Target:  5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3'
miRNA:   3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 40864 0.7 0.423117
Target:  5'- -aCGCCUGGUuaaaauucgaCGCagacaACACGCCAAACg -3'
miRNA:   3'- agGCGGACUA----------GCGgc---UGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 6835 0.7 0.423117
Target:  5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3'
miRNA:   3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.