miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 6835 0.7 0.423117
Target:  5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3'
miRNA:   3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 35779 0.7 0.432633
Target:  5'- gCCGCCUGcagCGaCC-ACACGCCAGc- -3'
miRNA:   3'- aGGCGGACua-GC-GGcUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 25072 0.7 0.442272
Target:  5'- -aCGCCUGAUgaCGCCGGC-CGaCCucGCg -3'
miRNA:   3'- agGCGGACUA--GCGGCUGuGC-GGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 40191 0.7 0.442272
Target:  5'- -gCGCCgGAacacuuucgCGCCGACGagauCGCCAAGCg -3'
miRNA:   3'- agGCGGaCUa--------GCGGCUGU----GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 33236 0.7 0.442272
Target:  5'- gCgGCCUGcUCGUCGGCAaGCCGAuguGCg -3'
miRNA:   3'- aGgCGGACuAGCGGCUGUgCGGUU---UG- -5'
24864 5' -56.2 NC_005284.1 + 16703 0.69 0.452032
Target:  5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3'
miRNA:   3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5'
24864 5' -56.2 NC_005284.1 + 36286 0.69 0.461908
Target:  5'- -aCGCCgGaAUCGaCGuCACGCCGAGCg -3'
miRNA:   3'- agGCGGaC-UAGCgGCuGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 33441 0.69 0.492194
Target:  5'- gUCCGaCUcguUGAUCGCgCGACACGCg---- -3'
miRNA:   3'- -AGGC-GG---ACUAGCG-GCUGUGCGguuug -5'
24864 5' -56.2 NC_005284.1 + 42348 0.69 0.492194
Target:  5'- aUCCGCCcucGAUCGaaaCUGGCGCGCUGAc- -3'
miRNA:   3'- -AGGCGGa--CUAGC---GGCUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 31486 0.69 0.492194
Target:  5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3'
miRNA:   3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 33365 0.69 0.502492
Target:  5'- aCCGCCcGuucGUCgGCCGGCGCuGCCGAcgGCu -3'
miRNA:   3'- aGGCGGaC---UAG-CGGCUGUG-CGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 36834 0.69 0.502492
Target:  5'- aUCGCCgugaagcGAUCGCCGGCggcgauugucgGCGCCuugucGAGCg -3'
miRNA:   3'- aGGCGGa------CUAGCGGCUG-----------UGCGG-----UUUG- -5'
24864 5' -56.2 NC_005284.1 + 14583 0.68 0.520211
Target:  5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3'
miRNA:   3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 49374 0.68 0.533923
Target:  5'- cUUCGCC-GAgcgcgaGCUGGCGCGCCGcACg -3'
miRNA:   3'- -AGGCGGaCUag----CGGCUGUGCGGUuUG- -5'
24864 5' -56.2 NC_005284.1 + 29715 0.68 0.55526
Target:  5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3'
miRNA:   3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44853 0.68 0.55526
Target:  5'- gCCGCCUcaagCGCCG-UACGCCGc-- -3'
miRNA:   3'- aGGCGGAcua-GCGGCuGUGCGGUuug -5'
24864 5' -56.2 NC_005284.1 + 30687 0.67 0.566024
Target:  5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3'
miRNA:   3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 40676 0.67 0.566024
Target:  5'- gCCGuCCUcaucGAUCuCCGGCcccuCGCCGAGCa -3'
miRNA:   3'- aGGC-GGA----CUAGcGGCUGu---GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 4518 0.67 0.57359
Target:  5'- aUCCGCuucacgaucgccuuCUGAcgcuucagcgUCGCCGuuCGCGUCAGGCu -3'
miRNA:   3'- -AGGCG--------------GACU----------AGCGGCu-GUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 18564 0.67 0.57684
Target:  5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3'
miRNA:   3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.