Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 27701 | 0.67 | 0.57684 |
Target: 5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3' miRNA: 3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 805 | 0.67 | 0.57684 |
Target: 5'- uUCgGCCUGAUgGCgacguuCGGCugGCUcAACa -3' miRNA: 3'- -AGgCGGACUAgCG------GCUGugCGGuUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 13917 | 0.67 | 0.57684 |
Target: 5'- cUCCGCgCUGAacUCGgcaauCCGAUcCGCCAAAa -3' miRNA: 3'- -AGGCG-GACU--AGC-----GGCUGuGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 39130 | 0.67 | 0.57684 |
Target: 5'- cCCGCgUGAU--UCGGCACGCCGuuCu -3' miRNA: 3'- aGGCGgACUAgcGGCUGUGCGGUuuG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 27022 | 0.67 | 0.587702 |
Target: 5'- gCCGCCaaucaGUCagGCCGAUucgAUGCCAGACg -3' miRNA: 3'- aGGCGGac---UAG--CGGCUG---UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 32950 | 0.67 | 0.5986 |
Target: 5'- aUCGCCca--CGCCGGCggcgcuggaaGCGCCGGGCa -3' miRNA: 3'- aGGCGGacuaGCGGCUG----------UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 39430 | 0.67 | 0.5986 |
Target: 5'- -aUGCC-GAUCgagccaucgGCCuGCACGCCGAGCg -3' miRNA: 3'- agGCGGaCUAG---------CGGcUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 30083 | 0.67 | 0.5986 |
Target: 5'- uUUCGCCcu-UCGgCGACAUGCCAc-- -3' miRNA: 3'- -AGGCGGacuAGCgGCUGUGCGGUuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 10549 | 0.67 | 0.5986 |
Target: 5'- gCCgGCCUgGAUCGCCucaAgACGUCGAACc -3' miRNA: 3'- aGG-CGGA-CUAGCGGc--UgUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16007 | 0.67 | 0.5986 |
Target: 5'- -gCGCCaUGAUCGCa-ACuacuuCGCCGGACa -3' miRNA: 3'- agGCGG-ACUAGCGgcUGu----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 44346 | 0.67 | 0.608433 |
Target: 5'- gCCGCCcGcGUCGCCaaauuccGAUAUGCCGAcuGCg -3' miRNA: 3'- aGGCGGaC-UAGCGG-------CUGUGCGGUU--UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 43201 | 0.67 | 0.609527 |
Target: 5'- gCCGCgUaGUCGCCGAgcucCGCGUCGAucuGCg -3' miRNA: 3'- aGGCGgAcUAGCGGCU----GUGCGGUU---UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 15933 | 0.67 | 0.620473 |
Target: 5'- uUCCGgcguuCCUGA-CGUCGGCGCGCgAcGCc -3' miRNA: 3'- -AGGC-----GGACUaGCGGCUGUGCGgUuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 3824 | 0.67 | 0.620473 |
Target: 5'- aUCUGUg-GAUCGaCGAaGCGCCGAACg -3' miRNA: 3'- -AGGCGgaCUAGCgGCUgUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 6886 | 0.67 | 0.620473 |
Target: 5'- --aGCgUGAUCGuaauCCGugACGCCuuGCa -3' miRNA: 3'- aggCGgACUAGC----GGCugUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 41411 | 0.66 | 0.628141 |
Target: 5'- aCCGCCgcagacaGAUCGCCGcccaccgucagcuuGC-CGCCGAc- -3' miRNA: 3'- aGGCGGa------CUAGCGGC--------------UGuGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 45255 | 0.66 | 0.631429 |
Target: 5'- gUUGCUUGAUCGUcuccuCGACGagcgcuCGCCGGGCg -3' miRNA: 3'- aGGCGGACUAGCG-----GCUGU------GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 52475 | 0.66 | 0.631429 |
Target: 5'- cCCGUC-GGUCaGCgaaaugGGCACGCCAAGCc -3' miRNA: 3'- aGGCGGaCUAG-CGg-----CUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 44706 | 0.66 | 0.631429 |
Target: 5'- cCCGCCgcggucgcGGUCGCCG-CGCGUUccGCu -3' miRNA: 3'- aGGCGGa-------CUAGCGGCuGUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31586 | 0.66 | 0.631429 |
Target: 5'- aCCGCCc-GUCGUCGACGCaGCU--GCa -3' miRNA: 3'- aGGCGGacUAGCGGCUGUG-CGGuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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