miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 6886 0.67 0.620473
Target:  5'- --aGCgUGAUCGuaauCCGugACGCCuuGCa -3'
miRNA:   3'- aggCGgACUAGC----GGCugUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 43201 0.67 0.609527
Target:  5'- gCCGCgUaGUCGCCGAgcucCGCGUCGAucuGCg -3'
miRNA:   3'- aGGCGgAcUAGCGGCU----GUGCGGUU---UG- -5'
24864 5' -56.2 NC_005284.1 + 44346 0.67 0.608433
Target:  5'- gCCGCCcGcGUCGCCaaauuccGAUAUGCCGAcuGCg -3'
miRNA:   3'- aGGCGGaC-UAGCGG-------CUGUGCGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 39430 0.67 0.5986
Target:  5'- -aUGCC-GAUCgagccaucgGCCuGCACGCCGAGCg -3'
miRNA:   3'- agGCGGaCUAG---------CGGcUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 32950 0.67 0.5986
Target:  5'- aUCGCCca--CGCCGGCggcgcuggaaGCGCCGGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGCUG----------UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 16007 0.67 0.5986
Target:  5'- -gCGCCaUGAUCGCa-ACuacuuCGCCGGACa -3'
miRNA:   3'- agGCGG-ACUAGCGgcUGu----GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 30083 0.67 0.5986
Target:  5'- uUUCGCCcu-UCGgCGACAUGCCAc-- -3'
miRNA:   3'- -AGGCGGacuAGCgGCUGUGCGGUuug -5'
24864 5' -56.2 NC_005284.1 + 10549 0.67 0.5986
Target:  5'- gCCgGCCUgGAUCGCCucaAgACGUCGAACc -3'
miRNA:   3'- aGG-CGGA-CUAGCGGc--UgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 27022 0.67 0.587702
Target:  5'- gCCGCCaaucaGUCagGCCGAUucgAUGCCAGACg -3'
miRNA:   3'- aGGCGGac---UAG--CGGCUG---UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 805 0.67 0.57684
Target:  5'- uUCgGCCUGAUgGCgacguuCGGCugGCUcAACa -3'
miRNA:   3'- -AGgCGGACUAgCG------GCUGugCGGuUUG- -5'
24864 5' -56.2 NC_005284.1 + 27701 0.67 0.57684
Target:  5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3'
miRNA:   3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 39130 0.67 0.57684
Target:  5'- cCCGCgUGAU--UCGGCACGCCGuuCu -3'
miRNA:   3'- aGGCGgACUAgcGGCUGUGCGGUuuG- -5'
24864 5' -56.2 NC_005284.1 + 13917 0.67 0.57684
Target:  5'- cUCCGCgCUGAacUCGgcaauCCGAUcCGCCAAAa -3'
miRNA:   3'- -AGGCG-GACU--AGC-----GGCUGuGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 18564 0.67 0.57684
Target:  5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3'
miRNA:   3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 4518 0.67 0.57359
Target:  5'- aUCCGCuucacgaucgccuuCUGAcgcuucagcgUCGCCGuuCGCGUCAGGCu -3'
miRNA:   3'- -AGGCG--------------GACU----------AGCGGCu-GUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 40676 0.67 0.566024
Target:  5'- gCCGuCCUcaucGAUCuCCGGCcccuCGCCGAGCa -3'
miRNA:   3'- aGGC-GGA----CUAGcGGCUGu---GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 30687 0.67 0.566024
Target:  5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3'
miRNA:   3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 29715 0.68 0.55526
Target:  5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3'
miRNA:   3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44853 0.68 0.55526
Target:  5'- gCCGCCUcaagCGCCG-UACGCCGc-- -3'
miRNA:   3'- aGGCGGAcua-GCGGCuGUGCGGUuug -5'
24864 5' -56.2 NC_005284.1 + 49374 0.68 0.533923
Target:  5'- cUUCGCC-GAgcgcgaGCUGGCGCGCCGcACg -3'
miRNA:   3'- -AGGCGGaCUag----CGGCUGUGCGGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.