Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 14583 | 0.68 | 0.520211 |
Target: 5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3' miRNA: 3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36834 | 0.69 | 0.502492 |
Target: 5'- aUCGCCgugaagcGAUCGCCGGCggcgauugucgGCGCCuugucGAGCg -3' miRNA: 3'- aGGCGGa------CUAGCGGCUG-----------UGCGG-----UUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33365 | 0.69 | 0.502492 |
Target: 5'- aCCGCCcGuucGUCgGCCGGCGCuGCCGAcgGCu -3' miRNA: 3'- aGGCGGaC---UAG-CGGCUGUG-CGGUU--UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31486 | 0.69 | 0.492194 |
Target: 5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3' miRNA: 3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33441 | 0.69 | 0.492194 |
Target: 5'- gUCCGaCUcguUGAUCGCgCGACACGCg---- -3' miRNA: 3'- -AGGC-GG---ACUAGCG-GCUGUGCGguuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 42348 | 0.69 | 0.492194 |
Target: 5'- aUCCGCCcucGAUCGaaaCUGGCGCGCUGAc- -3' miRNA: 3'- -AGGCGGa--CUAGC---GGCUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36286 | 0.69 | 0.461908 |
Target: 5'- -aCGCCgGaAUCGaCGuCACGCCGAGCg -3' miRNA: 3'- agGCGGaC-UAGCgGCuGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16703 | 0.69 | 0.452032 |
Target: 5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3' miRNA: 3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33236 | 0.7 | 0.442272 |
Target: 5'- gCgGCCUGcUCGUCGGCAaGCCGAuguGCg -3' miRNA: 3'- aGgCGGACuAGCGGCUGUgCGGUU---UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 25072 | 0.7 | 0.442272 |
Target: 5'- -aCGCCUGAUgaCGCCGGC-CGaCCucGCg -3' miRNA: 3'- agGCGGACUA--GCGGCUGuGC-GGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40191 | 0.7 | 0.442272 |
Target: 5'- -gCGCCgGAacacuuucgCGCCGACGagauCGCCAAGCg -3' miRNA: 3'- agGCGGaCUa--------GCGGCUGU----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35779 | 0.7 | 0.432633 |
Target: 5'- gCCGCCUGcagCGaCC-ACACGCCAGc- -3' miRNA: 3'- aGGCGGACua-GC-GGcUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 6835 | 0.7 | 0.423117 |
Target: 5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3' miRNA: 3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40864 | 0.7 | 0.423117 |
Target: 5'- -aCGCCUGGUuaaaauucgaCGCagacaACACGCCAAACg -3' miRNA: 3'- agGCGGACUA----------GCGgc---UGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 41358 | 0.7 | 0.423117 |
Target: 5'- aUCUgGCCUgcgGAUCGCCGAgaCACGCCc-GCg -3' miRNA: 3'- -AGG-CGGA---CUAGCGGCU--GUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 26904 | 0.7 | 0.412795 |
Target: 5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3' miRNA: 3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 3888 | 0.7 | 0.39534 |
Target: 5'- cUCCGCUcucgaUGAaugCGCCGAgCACGcCCGAAUg -3' miRNA: 3'- -AGGCGG-----ACUa--GCGGCU-GUGC-GGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 180 | 0.71 | 0.377488 |
Target: 5'- gCCGCCggacugGAUUGUCGGCgagGCGCgGGGCa -3' miRNA: 3'- aGGCGGa-----CUAGCGGCUG---UGCGgUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35361 | 0.71 | 0.367903 |
Target: 5'- cCCGCCUugcacaacgaacgGcgCGCCGAuCACGCCu-GCa -3' miRNA: 3'- aGGCGGA-------------CuaGCGGCU-GUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 18789 | 0.71 | 0.351746 |
Target: 5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3' miRNA: 3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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