miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 180 0.71 0.377488
Target:  5'- gCCGCCggacugGAUUGUCGGCgagGCGCgGGGCa -3'
miRNA:   3'- aGGCGGa-----CUAGCGGCUG---UGCGgUUUG- -5'
24864 5' -56.2 NC_005284.1 + 468 0.66 0.686018
Target:  5'- -gCGCCUGGUCGgCG-CAaaGCCGAAa -3'
miRNA:   3'- agGCGGACUAGCgGCuGUg-CGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 805 0.67 0.57684
Target:  5'- uUCgGCCUGAUgGCgacguuCGGCugGCUcAACa -3'
miRNA:   3'- -AGgCGGACUAgCG------GCUGugCGGuUUG- -5'
24864 5' -56.2 NC_005284.1 + 2431 0.66 0.631429
Target:  5'- gUCCGUCUGAUCGCgGAaacaauCGC--GACu -3'
miRNA:   3'- -AGGCGGACUAGCGgCUgu----GCGguUUG- -5'
24864 5' -56.2 NC_005284.1 + 3824 0.67 0.620473
Target:  5'- aUCUGUg-GAUCGaCGAaGCGCCGAACg -3'
miRNA:   3'- -AGGCGgaCUAGCgGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 3888 0.7 0.39534
Target:  5'- cUCCGCUcucgaUGAaugCGCCGAgCACGcCCGAAUg -3'
miRNA:   3'- -AGGCGG-----ACUa--GCGGCU-GUGC-GGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 4518 0.67 0.57359
Target:  5'- aUCCGCuucacgaucgccuuCUGAcgcuucagcgUCGCCGuuCGCGUCAGGCu -3'
miRNA:   3'- -AGGCG--------------GACU----------AGCGGCu-GUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 5153 0.66 0.686018
Target:  5'- aCCGUCgGAacgcCGCUGACGCGCgaucagcuCAAACg -3'
miRNA:   3'- aGGCGGaCUa---GCGGCUGUGCG--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 5398 0.66 0.642386
Target:  5'- gCUGCUUGccCGUgCGGCGCGCCAGcucGCg -3'
miRNA:   3'- aGGCGGACuaGCG-GCUGUGCGGUU---UG- -5'
24864 5' -56.2 NC_005284.1 + 6835 0.7 0.423117
Target:  5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3'
miRNA:   3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 6886 0.67 0.620473
Target:  5'- --aGCgUGAUCGuaauCCGugACGCCuuGCa -3'
miRNA:   3'- aggCGgACUAGC----GGCugUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 9639 0.66 0.642386
Target:  5'- gUCGCCgug-CGUCGAcCACGCCuuGCc -3'
miRNA:   3'- aGGCGGacuaGCGGCU-GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 10549 0.67 0.5986
Target:  5'- gCCgGCCUgGAUCGCCucaAgACGUCGAACc -3'
miRNA:   3'- aGG-CGGA-CUAGCGGc--UgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 13917 0.67 0.57684
Target:  5'- cUCCGCgCUGAacUCGgcaauCCGAUcCGCCAAAa -3'
miRNA:   3'- -AGGCG-GACU--AGC-----GGCUGuGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 14583 0.68 0.520211
Target:  5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3'
miRNA:   3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 15095 0.66 0.664261
Target:  5'- gCCGUCUGccUCG-CGGCGCGCUugucGAGCa -3'
miRNA:   3'- aGGCGGACu-AGCgGCUGUGCGG----UUUG- -5'
24864 5' -56.2 NC_005284.1 + 15933 0.67 0.620473
Target:  5'- uUCCGgcguuCCUGA-CGUCGGCGCGCgAcGCc -3'
miRNA:   3'- -AGGC-----GGACUaGCGGCUGUGCGgUuUG- -5'
24864 5' -56.2 NC_005284.1 + 16007 0.67 0.5986
Target:  5'- -gCGCCaUGAUCGCa-ACuacuuCGCCGGACa -3'
miRNA:   3'- agGCGG-ACUAGCGgcUGu----GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 16703 0.69 0.452032
Target:  5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3'
miRNA:   3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5'
24864 5' -56.2 NC_005284.1 + 16970 0.76 0.186044
Target:  5'- aUCCGCgUG--CGCCGcauCACGCCGAACg -3'
miRNA:   3'- -AGGCGgACuaGCGGCu--GUGCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.