miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 17700 0.76 0.191095
Target:  5'- -aCGcCCUGAaucUCGCCGGCGCGUCGAugGCg -3'
miRNA:   3'- agGC-GGACU---AGCGGCUGUGCGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 18564 0.67 0.57684
Target:  5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3'
miRNA:   3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 18789 0.71 0.351746
Target:  5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3'
miRNA:   3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 19006 0.66 0.676248
Target:  5'- gCCGCCUGuuucagcucuacgcCGCCGGCACG--AAGCu -3'
miRNA:   3'- aGGCGGACua------------GCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 20488 0.66 0.653333
Target:  5'- gCCGCgCUGAUgCGCUGACG-GaCGAGCa -3'
miRNA:   3'- aGGCG-GACUA-GCGGCUGUgCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 23519 1.09 0.000808
Target:  5'- uUCCGCCUGAUCGCCGACACGCCAAACc -3'
miRNA:   3'- -AGGCGGACUAGCGGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 25072 0.7 0.442272
Target:  5'- -aCGCCUGAUgaCGCCGGC-CGaCCucGCg -3'
miRNA:   3'- agGCGGACUA--GCGGCUGuGC-GGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 26904 0.7 0.412795
Target:  5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3'
miRNA:   3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 27022 0.67 0.587702
Target:  5'- gCCGCCaaucaGUCagGCCGAUucgAUGCCAGACg -3'
miRNA:   3'- aGGCGGac---UAG--CGGCUG---UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 27701 0.67 0.57684
Target:  5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3'
miRNA:   3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 28756 0.66 0.664261
Target:  5'- aUCCGg--GGUCGCCGACAUcgaGCCccGGCa -3'
miRNA:   3'- -AGGCggaCUAGCGGCUGUG---CGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 29715 0.68 0.55526
Target:  5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3'
miRNA:   3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 30083 0.67 0.5986
Target:  5'- uUUCGCCcu-UCGgCGACAUGCCAc-- -3'
miRNA:   3'- -AGGCGGacuAGCgGCUGUGCGGUuug -5'
24864 5' -56.2 NC_005284.1 + 30687 0.67 0.566024
Target:  5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3'
miRNA:   3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 31472 0.66 0.682765
Target:  5'- aCCGCCgugcCGCCGgaaaagcgcgcauuGCGCGCCucGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGC--------------UGUGCGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 31486 0.69 0.492194
Target:  5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3'
miRNA:   3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 31586 0.66 0.631429
Target:  5'- aCCGCCc-GUCGUCGACGCaGCU--GCa -3'
miRNA:   3'- aGGCGGacUAGCGGCUGUG-CGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 32873 0.76 0.171594
Target:  5'- cUCGCgCUGAucgUCGCCGGCgACGCCGAAa -3'
miRNA:   3'- aGGCG-GACU---AGCGGCUG-UGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 32950 0.67 0.5986
Target:  5'- aUCGCCca--CGCCGGCggcgcuggaaGCGCCGGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGCUG----------UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 33236 0.7 0.442272
Target:  5'- gCgGCCUGcUCGUCGGCAaGCCGAuguGCg -3'
miRNA:   3'- aGgCGGACuAGCGGCUGUgCGGUU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.