miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 52475 0.66 0.631429
Target:  5'- cCCGUC-GGUCaGCgaaaugGGCACGCCAAGCc -3'
miRNA:   3'- aGGCGGaCUAG-CGg-----CUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 49374 0.68 0.533923
Target:  5'- cUUCGCC-GAgcgcgaGCUGGCGCGCCGcACg -3'
miRNA:   3'- -AGGCGGaCUag----CGGCUGUGCGGUuUG- -5'
24864 5' -56.2 NC_005284.1 + 46782 0.66 0.686018
Target:  5'- aUUCGCCUGcaugugcgcGUCGUCacucGCGCGCgCGAACu -3'
miRNA:   3'- -AGGCGGAC---------UAGCGGc---UGUGCG-GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 46448 0.72 0.304086
Target:  5'- aUCGCC--GUCGCCGAaugcCGCCGAGCg -3'
miRNA:   3'- aGGCGGacUAGCGGCUgu--GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 46345 0.75 0.218181
Target:  5'- cUCCGCC--GUCGCgGGCuCGCCGGACc -3'
miRNA:   3'- -AGGCGGacUAGCGgCUGuGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 45353 0.75 0.218181
Target:  5'- aUCCGCCcGGcCGCgagCGACACGCCGAGu -3'
miRNA:   3'- -AGGCGGaCUaGCG---GCUGUGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 45255 0.66 0.631429
Target:  5'- gUUGCUUGAUCGUcuccuCGACGagcgcuCGCCGGGCg -3'
miRNA:   3'- aGGCGGACUAGCG-----GCUGU------GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44853 0.68 0.55526
Target:  5'- gCCGCCUcaagCGCCG-UACGCCGc-- -3'
miRNA:   3'- aGGCGGAcua-GCGGCuGUGCGGUuug -5'
24864 5' -56.2 NC_005284.1 + 44706 0.66 0.631429
Target:  5'- cCCGCCgcggucgcGGUCGCCG-CGCGUUccGCu -3'
miRNA:   3'- aGGCGGa-------CUAGCGGCuGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 44346 0.67 0.608433
Target:  5'- gCCGCCcGcGUCGCCaaauuccGAUAUGCCGAcuGCg -3'
miRNA:   3'- aGGCGGaC-UAGCGG-------CUGUGCGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 44280 0.76 0.180625
Target:  5'- gCUGCCUGAUCGgcauccgagaccaCCGACGgcgcauCGCCAAACg -3'
miRNA:   3'- aGGCGGACUAGC-------------GGCUGU------GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44162 0.72 0.304086
Target:  5'- gCCGCCgcucGUCGCCGACACG--AAGCg -3'
miRNA:   3'- aGGCGGac--UAGCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 44109 0.66 0.67516
Target:  5'- cCCGCCgugucGAUCGCgcccgCGGCGCGCa---- -3'
miRNA:   3'- aGGCGGa----CUAGCG-----GCUGUGCGguuug -5'
24864 5' -56.2 NC_005284.1 + 43201 0.67 0.609527
Target:  5'- gCCGCgUaGUCGCCGAgcucCGCGUCGAucuGCg -3'
miRNA:   3'- aGGCGgAcUAGCGGCU----GUGCGGUU---UG- -5'
24864 5' -56.2 NC_005284.1 + 42920 0.76 0.181112
Target:  5'- cCCGCUUca-CGCCGACGCGCCAGu- -3'
miRNA:   3'- aGGCGGAcuaGCGGCUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 42720 0.76 0.171594
Target:  5'- cUCCGaacaCCUGAgacaUCGCCGcACGCGCCGAAa -3'
miRNA:   3'- -AGGC----GGACU----AGCGGC-UGUGCGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 42348 0.69 0.492194
Target:  5'- aUCCGCCcucGAUCGaaaCUGGCGCGCUGAc- -3'
miRNA:   3'- -AGGCGGa--CUAGC---GGCUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 41411 0.66 0.628141
Target:  5'- aCCGCCgcagacaGAUCGCCGcccaccgucagcuuGC-CGCCGAc- -3'
miRNA:   3'- aGGCGGa------CUAGCGGC--------------UGuGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 41358 0.7 0.423117
Target:  5'- aUCUgGCCUgcgGAUCGCCGAgaCACGCCc-GCg -3'
miRNA:   3'- -AGG-CGGA---CUAGCGGCU--GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 40864 0.7 0.423117
Target:  5'- -aCGCCUGGUuaaaauucgaCGCagacaACACGCCAAACg -3'
miRNA:   3'- agGCGGACUA----------GCGgc---UGUGCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.