Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 40676 | 0.67 | 0.566024 |
Target: 5'- gCCGuCCUcaucGAUCuCCGGCcccuCGCCGAGCa -3' miRNA: 3'- aGGC-GGA----CUAGcGGCUGu---GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40191 | 0.7 | 0.442272 |
Target: 5'- -gCGCCgGAacacuuucgCGCCGACGagauCGCCAAGCg -3' miRNA: 3'- agGCGGaCUa--------GCGGCUGU----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40131 | 0.74 | 0.247844 |
Target: 5'- gUCCGCCgucgGAUUGCCGGCcggaaaauucacgGCGUCGAGg -3' miRNA: 3'- -AGGCGGa---CUAGCGGCUG-------------UGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 39430 | 0.67 | 0.5986 |
Target: 5'- -aUGCC-GAUCgagccaucgGCCuGCACGCCGAGCg -3' miRNA: 3'- agGCGGaCUAG---------CGGcUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 39130 | 0.67 | 0.57684 |
Target: 5'- cCCGCgUGAU--UCGGCACGCCGuuCu -3' miRNA: 3'- aGGCGgACUAgcGGCUGUGCGGUuuG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 38609 | 0.75 | 0.212513 |
Target: 5'- gCCGCCcag-CGCCaucGACGCGCCGAGCc -3' miRNA: 3'- aGGCGGacuaGCGG---CUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 38255 | 0.66 | 0.664261 |
Target: 5'- aUUGuCCUGGUgcCGCCaGCGCGCCcGGCa -3' miRNA: 3'- aGGC-GGACUA--GCGGcUGUGCGGuUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36834 | 0.69 | 0.502492 |
Target: 5'- aUCGCCgugaagcGAUCGCCGGCggcgauugucgGCGCCuugucGAGCg -3' miRNA: 3'- aGGCGGa------CUAGCGGCUG-----------UGCGG-----UUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36286 | 0.69 | 0.461908 |
Target: 5'- -aCGCCgGaAUCGaCGuCACGCCGAGCg -3' miRNA: 3'- agGCGGaC-UAGCgGCuGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35779 | 0.7 | 0.432633 |
Target: 5'- gCCGCCUGcagCGaCC-ACACGCCAGc- -3' miRNA: 3'- aGGCGGACua-GC-GGcUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35361 | 0.71 | 0.367903 |
Target: 5'- cCCGCCUugcacaacgaacgGcgCGCCGAuCACGCCu-GCa -3' miRNA: 3'- aGGCGGA-------------CuaGCGGCU-GUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33441 | 0.69 | 0.492194 |
Target: 5'- gUCCGaCUcguUGAUCGCgCGACACGCg---- -3' miRNA: 3'- -AGGC-GG---ACUAGCG-GCUGUGCGguuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33365 | 0.69 | 0.502492 |
Target: 5'- aCCGCCcGuucGUCgGCCGGCGCuGCCGAcgGCu -3' miRNA: 3'- aGGCGGaC---UAG-CGGCUGUG-CGGUU--UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33236 | 0.7 | 0.442272 |
Target: 5'- gCgGCCUGcUCGUCGGCAaGCCGAuguGCg -3' miRNA: 3'- aGgCGGACuAGCGGCUGUgCGGUU---UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 32950 | 0.67 | 0.5986 |
Target: 5'- aUCGCCca--CGCCGGCggcgcuggaaGCGCCGGGCa -3' miRNA: 3'- aGGCGGacuaGCGGCUG----------UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 32873 | 0.76 | 0.171594 |
Target: 5'- cUCGCgCUGAucgUCGCCGGCgACGCCGAAa -3' miRNA: 3'- aGGCG-GACU---AGCGGCUG-UGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31586 | 0.66 | 0.631429 |
Target: 5'- aCCGCCc-GUCGUCGACGCaGCU--GCa -3' miRNA: 3'- aGGCGGacUAGCGGCUGUG-CGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31486 | 0.69 | 0.492194 |
Target: 5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3' miRNA: 3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31472 | 0.66 | 0.682765 |
Target: 5'- aCCGCCgugcCGCCGgaaaagcgcgcauuGCGCGCCucGGCa -3' miRNA: 3'- aGGCGGacuaGCGGC--------------UGUGCGGu-UUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 30687 | 0.67 | 0.566024 |
Target: 5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3' miRNA: 3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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