Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 30083 | 0.67 | 0.5986 |
Target: 5'- uUUCGCCcu-UCGgCGACAUGCCAc-- -3' miRNA: 3'- -AGGCGGacuAGCgGCUGUGCGGUuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 29715 | 0.68 | 0.55526 |
Target: 5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3' miRNA: 3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 28756 | 0.66 | 0.664261 |
Target: 5'- aUCCGg--GGUCGCCGACAUcgaGCCccGGCa -3' miRNA: 3'- -AGGCggaCUAGCGGCUGUG---CGGu-UUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 27701 | 0.67 | 0.57684 |
Target: 5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3' miRNA: 3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 27022 | 0.67 | 0.587702 |
Target: 5'- gCCGCCaaucaGUCagGCCGAUucgAUGCCAGACg -3' miRNA: 3'- aGGCGGac---UAG--CGGCUG---UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 26904 | 0.7 | 0.412795 |
Target: 5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3' miRNA: 3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 25072 | 0.7 | 0.442272 |
Target: 5'- -aCGCCUGAUgaCGCCGGC-CGaCCucGCg -3' miRNA: 3'- agGCGGACUA--GCGGCUGuGC-GGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 23519 | 1.09 | 0.000808 |
Target: 5'- uUCCGCCUGAUCGCCGACACGCCAAACc -3' miRNA: 3'- -AGGCGGACUAGCGGCUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 20488 | 0.66 | 0.653333 |
Target: 5'- gCCGCgCUGAUgCGCUGACG-GaCGAGCa -3' miRNA: 3'- aGGCG-GACUA-GCGGCUGUgCgGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 19006 | 0.66 | 0.676248 |
Target: 5'- gCCGCCUGuuucagcucuacgcCGCCGGCACG--AAGCu -3' miRNA: 3'- aGGCGGACua------------GCGGCUGUGCggUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 18789 | 0.71 | 0.351746 |
Target: 5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3' miRNA: 3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 18564 | 0.67 | 0.57684 |
Target: 5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3' miRNA: 3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 17700 | 0.76 | 0.191095 |
Target: 5'- -aCGcCCUGAaucUCGCCGGCGCGUCGAugGCg -3' miRNA: 3'- agGC-GGACU---AGCGGCUGUGCGGUU--UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16970 | 0.76 | 0.186044 |
Target: 5'- aUCCGCgUG--CGCCGcauCACGCCGAACg -3' miRNA: 3'- -AGGCGgACuaGCGGCu--GUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16703 | 0.69 | 0.452032 |
Target: 5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3' miRNA: 3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 16007 | 0.67 | 0.5986 |
Target: 5'- -gCGCCaUGAUCGCa-ACuacuuCGCCGGACa -3' miRNA: 3'- agGCGG-ACUAGCGgcUGu----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 15933 | 0.67 | 0.620473 |
Target: 5'- uUCCGgcguuCCUGA-CGUCGGCGCGCgAcGCc -3' miRNA: 3'- -AGGC-----GGACUaGCGGCUGUGCGgUuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 15095 | 0.66 | 0.664261 |
Target: 5'- gCCGUCUGccUCG-CGGCGCGCUugucGAGCa -3' miRNA: 3'- aGGCGGACu-AGCgGCUGUGCGG----UUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 14583 | 0.68 | 0.520211 |
Target: 5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3' miRNA: 3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 13917 | 0.67 | 0.57684 |
Target: 5'- cUCCGCgCUGAacUCGgcaauCCGAUcCGCCAAAa -3' miRNA: 3'- -AGGCG-GACU--AGC-----GGCUGuGCGGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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