miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 31472 0.66 0.682765
Target:  5'- aCCGCCgugcCGCCGgaaaagcgcgcauuGCGCGCCucGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGC--------------UGUGCGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 27701 0.67 0.57684
Target:  5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3'
miRNA:   3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 18564 0.67 0.57684
Target:  5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3'
miRNA:   3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 10549 0.67 0.5986
Target:  5'- gCCgGCCUgGAUCGCCucaAgACGUCGAACc -3'
miRNA:   3'- aGG-CGGA-CUAGCGGc--UgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 6886 0.67 0.620473
Target:  5'- --aGCgUGAUCGuaauCCGugACGCCuuGCa -3'
miRNA:   3'- aggCGgACUAGC----GGCugUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 3824 0.67 0.620473
Target:  5'- aUCUGUg-GAUCGaCGAaGCGCCGAACg -3'
miRNA:   3'- -AGGCGgaCUAGCgGCUgUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 15933 0.67 0.620473
Target:  5'- uUCCGgcguuCCUGA-CGUCGGCGCGCgAcGCc -3'
miRNA:   3'- -AGGC-----GGACUaGCGGCUGUGCGgUuUG- -5'
24864 5' -56.2 NC_005284.1 + 2431 0.66 0.631429
Target:  5'- gUCCGUCUGAUCGCgGAaacaauCGC--GACu -3'
miRNA:   3'- -AGGCGGACUAGCGgCUgu----GCGguUUG- -5'
24864 5' -56.2 NC_005284.1 + 38255 0.66 0.664261
Target:  5'- aUUGuCCUGGUgcCGCCaGCGCGCCcGGCa -3'
miRNA:   3'- aGGC-GGACUA--GCGGcUGUGCGGuUUG- -5'
24864 5' -56.2 NC_005284.1 + 805 0.67 0.57684
Target:  5'- uUCgGCCUGAUgGCgacguuCGGCugGCUcAACa -3'
miRNA:   3'- -AGgCGGACUAgCG------GCUGugCGGuUUG- -5'
24864 5' -56.2 NC_005284.1 + 30687 0.67 0.566024
Target:  5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3'
miRNA:   3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 49374 0.68 0.533923
Target:  5'- cUUCGCC-GAgcgcgaGCUGGCGCGCCGcACg -3'
miRNA:   3'- -AGGCGGaCUag----CGGCUGUGCGGUuUG- -5'
24864 5' -56.2 NC_005284.1 + 46448 0.72 0.304086
Target:  5'- aUCGCC--GUCGCCGAaugcCGCCGAGCg -3'
miRNA:   3'- aGGCGGacUAGCGGCUgu--GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 18789 0.71 0.351746
Target:  5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3'
miRNA:   3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 180 0.71 0.377488
Target:  5'- gCCGCCggacugGAUUGUCGGCgagGCGCgGGGCa -3'
miRNA:   3'- aGGCGGa-----CUAGCGGCUG---UGCGgUUUG- -5'
24864 5' -56.2 NC_005284.1 + 26904 0.7 0.412795
Target:  5'- cCCGCugaaauugcgggaCUGAuuUCGgCGAUGCGCCGGGCg -3'
miRNA:   3'- aGGCG-------------GACU--AGCgGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 41358 0.7 0.423117
Target:  5'- aUCUgGCCUgcgGAUCGCCGAgaCACGCCc-GCg -3'
miRNA:   3'- -AGG-CGGA---CUAGCGGCU--GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 16703 0.69 0.452032
Target:  5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3'
miRNA:   3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5'
24864 5' -56.2 NC_005284.1 + 33365 0.69 0.502492
Target:  5'- aCCGCCcGuucGUCgGCCGGCGCuGCCGAcgGCu -3'
miRNA:   3'- aGGCGGaC---UAG-CGGCUGUG-CGGUU--UG- -5'
24864 5' -56.2 NC_005284.1 + 14583 0.68 0.520211
Target:  5'- -gCGCUUGGcgaucUCGUCGGCgcgaaaguguuccgGCGCCGAACg -3'
miRNA:   3'- agGCGGACU-----AGCGGCUG--------------UGCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.