Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24864 | 5' | -56.2 | NC_005284.1 | + | 36286 | 0.69 | 0.461908 |
Target: 5'- -aCGCCgGaAUCGaCGuCACGCCGAGCg -3' miRNA: 3'- agGCGGaC-UAGCgGCuGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 31486 | 0.69 | 0.492194 |
Target: 5'- uUCCGUCgacGA-CGCCGggauACACGCCGAu- -3' miRNA: 3'- -AGGCGGa--CUaGCGGC----UGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 29715 | 0.68 | 0.55526 |
Target: 5'- aUCCGuCCuUGAcaaucaccaCGUCGGgGCGCCGAACa -3' miRNA: 3'- -AGGC-GG-ACUa--------GCGGCUgUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 13917 | 0.67 | 0.57684 |
Target: 5'- cUCCGCgCUGAacUCGgcaauCCGAUcCGCCAAAa -3' miRNA: 3'- -AGGCG-GACU--AGC-----GGCUGuGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 3888 | 0.7 | 0.39534 |
Target: 5'- cUCCGCUcucgaUGAaugCGCCGAgCACGcCCGAAUg -3' miRNA: 3'- -AGGCGG-----ACUa--GCGGCU-GUGC-GGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35779 | 0.7 | 0.432633 |
Target: 5'- gCCGCCUGcagCGaCC-ACACGCCAGc- -3' miRNA: 3'- aGGCGGACua-GC-GGcUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 42348 | 0.69 | 0.492194 |
Target: 5'- aUCCGCCcucGAUCGaaaCUGGCGCGCUGAc- -3' miRNA: 3'- -AGGCGGa--CUAGC---GGCUGUGCGGUUug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 39130 | 0.67 | 0.57684 |
Target: 5'- cCCGCgUGAU--UCGGCACGCCGuuCu -3' miRNA: 3'- aGGCGgACUAgcGGCUGUGCGGUuuG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33236 | 0.7 | 0.442272 |
Target: 5'- gCgGCCUGcUCGUCGGCAaGCCGAuguGCg -3' miRNA: 3'- aGgCGGACuAGCGGCUGUgCGGUU---UG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 27022 | 0.67 | 0.587702 |
Target: 5'- gCCGCCaaucaGUCagGCCGAUucgAUGCCAGACg -3' miRNA: 3'- aGGCGGac---UAG--CGGCUG---UGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 33441 | 0.69 | 0.492194 |
Target: 5'- gUCCGaCUcguUGAUCGCgCGACACGCg---- -3' miRNA: 3'- -AGGC-GG---ACUAGCG-GCUGUGCGguuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40191 | 0.7 | 0.442272 |
Target: 5'- -gCGCCgGAacacuuucgCGCCGACGagauCGCCAAGCg -3' miRNA: 3'- agGCGGaCUa--------GCGGCUGU----GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 36834 | 0.69 | 0.502492 |
Target: 5'- aUCGCCgugaagcGAUCGCCGGCggcgauugucgGCGCCuugucGAGCg -3' miRNA: 3'- aGGCGGa------CUAGCGGCUG-----------UGCGG-----UUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 44853 | 0.68 | 0.55526 |
Target: 5'- gCCGCCUcaagCGCCG-UACGCCGc-- -3' miRNA: 3'- aGGCGGAcua-GCGGCuGUGCGGUuug -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40676 | 0.67 | 0.566024 |
Target: 5'- gCCGuCCUcaucGAUCuCCGGCcccuCGCCGAGCa -3' miRNA: 3'- aGGC-GGA----CUAGcGGCUGu---GCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 4518 | 0.67 | 0.57359 |
Target: 5'- aUCCGCuucacgaucgccuuCUGAcgcuucagcgUCGCCGuuCGCGUCAGGCu -3' miRNA: 3'- -AGGCG--------------GACU----------AGCGGCu-GUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 23519 | 1.09 | 0.000808 |
Target: 5'- uUCCGCCUGAUCGCCGACACGCCAAACc -3' miRNA: 3'- -AGGCGGACUAGCGGCUGUGCGGUUUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 35361 | 0.71 | 0.367903 |
Target: 5'- cCCGCCUugcacaacgaacgGcgCGCCGAuCACGCCu-GCa -3' miRNA: 3'- aGGCGGA-------------CuaGCGGCU-GUGCGGuuUG- -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 6835 | 0.7 | 0.423117 |
Target: 5'- uUCC-CCUGcUCGUCGGCcaaccGCGCCAGAa -3' miRNA: 3'- -AGGcGGACuAGCGGCUG-----UGCGGUUUg -5' |
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24864 | 5' | -56.2 | NC_005284.1 | + | 40864 | 0.7 | 0.423117 |
Target: 5'- -aCGCCUGGUuaaaauucgaCGCagacaACACGCCAAACg -3' miRNA: 3'- agGCGGACUA----------GCGgc---UGUGCGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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