miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24864 5' -56.2 NC_005284.1 + 44162 0.72 0.304086
Target:  5'- gCCGCCgcucGUCGCCGACACG--AAGCg -3'
miRNA:   3'- aGGCGGac--UAGCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 42920 0.76 0.181112
Target:  5'- cCCGCUUca-CGCCGACGCGCCAGu- -3'
miRNA:   3'- aGGCGGAcuaGCGGCUGUGCGGUUug -5'
24864 5' -56.2 NC_005284.1 + 44280 0.76 0.180625
Target:  5'- gCUGCCUGAUCGgcauccgagaccaCCGACGgcgcauCGCCAAACg -3'
miRNA:   3'- aGGCGGACUAGC-------------GGCUGU------GCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 23519 1.09 0.000808
Target:  5'- uUCCGCCUGAUCGCCGACACGCCAAACc -3'
miRNA:   3'- -AGGCGGACUAGCGGCUGUGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 20488 0.66 0.653333
Target:  5'- gCCGCgCUGAUgCGCUGACG-GaCGAGCa -3'
miRNA:   3'- aGGCG-GACUA-GCGGCUGUgCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 15095 0.66 0.664261
Target:  5'- gCCGUCUGccUCG-CGGCGCGCUugucGAGCa -3'
miRNA:   3'- aGGCGGACu-AGCgGCUGUGCGG----UUUG- -5'
24864 5' -56.2 NC_005284.1 + 28756 0.66 0.664261
Target:  5'- aUCCGg--GGUCGCCGACAUcgaGCCccGGCa -3'
miRNA:   3'- -AGGCggaCUAGCGGCUGUG---CGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 44109 0.66 0.67516
Target:  5'- cCCGCCgugucGAUCGCgcccgCGGCGCGCa---- -3'
miRNA:   3'- aGGCGGa----CUAGCG-----GCUGUGCGguuug -5'
24864 5' -56.2 NC_005284.1 + 19006 0.66 0.676248
Target:  5'- gCCGCCUGuuucagcucuacgcCGCCGGCACG--AAGCu -3'
miRNA:   3'- aGGCGGACua------------GCGGCUGUGCggUUUG- -5'
24864 5' -56.2 NC_005284.1 + 5153 0.66 0.686018
Target:  5'- aCCGUCgGAacgcCGCUGACGCGCgaucagcuCAAACg -3'
miRNA:   3'- aGGCGGaCUa---GCGGCUGUGCG--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 46782 0.66 0.686018
Target:  5'- aUUCGCCUGcaugugcgcGUCGUCacucGCGCGCgCGAACu -3'
miRNA:   3'- -AGGCGGAC---------UAGCGGc---UGUGCG-GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 30687 0.67 0.566024
Target:  5'- gCgGCUUucUUGCCGACGCGCUcuGCa -3'
miRNA:   3'- aGgCGGAcuAGCGGCUGUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 31472 0.66 0.682765
Target:  5'- aCCGCCgugcCGCCGgaaaagcgcgcauuGCGCGCCucGGCa -3'
miRNA:   3'- aGGCGGacuaGCGGC--------------UGUGCGGu-UUG- -5'
24864 5' -56.2 NC_005284.1 + 18789 0.71 0.351746
Target:  5'- -gCGCCUGGUCGacacguCCGGCaACGUCGGGCc -3'
miRNA:   3'- agGCGGACUAGC------GGCUG-UGCGGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 468 0.66 0.686018
Target:  5'- -gCGCCUGGUCGgCG-CAaaGCCGAAa -3'
miRNA:   3'- agGCGGACUAGCgGCuGUg-CGGUUUg -5'
24864 5' -56.2 NC_005284.1 + 41358 0.7 0.423117
Target:  5'- aUCUgGCCUgcgGAUCGCCGAgaCACGCCc-GCg -3'
miRNA:   3'- -AGG-CGGA---CUAGCGGCU--GUGCGGuuUG- -5'
24864 5' -56.2 NC_005284.1 + 16703 0.69 0.452032
Target:  5'- gCCG-CUGA-CGuCCGACGCGCCGuggguGCg -3'
miRNA:   3'- aGGCgGACUaGC-GGCUGUGCGGUu----UG- -5'
24864 5' -56.2 NC_005284.1 + 18564 0.67 0.57684
Target:  5'- gCCGCCgucgGucguGUCGCUGACuGCGgCGGGCa -3'
miRNA:   3'- aGGCGGa---C----UAGCGGCUG-UGCgGUUUG- -5'
24864 5' -56.2 NC_005284.1 + 27701 0.67 0.57684
Target:  5'- gCUGCCUGAUU-CCGGCGCGauggauuuaCGAACc -3'
miRNA:   3'- aGGCGGACUAGcGGCUGUGCg--------GUUUG- -5'
24864 5' -56.2 NC_005284.1 + 805 0.67 0.57684
Target:  5'- uUCgGCCUGAUgGCgacguuCGGCugGCUcAACa -3'
miRNA:   3'- -AGgCGGACUAgCG------GCUGugCGGuUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.