miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 38256 0.67 0.218988
Target:  5'- -uUGUCCUgG-UGCCGCCagCGCGCCCGg -3'
miRNA:   3'- acGCGGGAgCuGCGGCGG--GCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 48852 0.67 0.213629
Target:  5'- gGCGUCCgCaACuGCCGCCUGCAUCUc -3'
miRNA:   3'- aCGCGGGaGcUG-CGGCGGGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 27112 0.67 0.213629
Target:  5'- gGCGaCCCgcgCGccACGCCgGCCCGUauagcggcgauuGCCCGa -3'
miRNA:   3'- aCGC-GGGa--GC--UGCGG-CGGGCG------------UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 45546 0.67 0.208383
Target:  5'- cGCGCUCUaugccgccgcgUGGCGCguCGCCCGCGCaCUc -3'
miRNA:   3'- aCGCGGGA-----------GCUGCG--GCGGGCGUG-GGu -5'
24865 3' -65.5 NC_005284.1 + 19003 0.67 0.208383
Target:  5'- aGCGCCgccuguuucagCUCuACGCCGCCgGCACg-- -3'
miRNA:   3'- aCGCGG-----------GAGcUGCGGCGGgCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 47130 0.67 0.208383
Target:  5'- --aGCCCauugacCGACGCCGCCCacguguacugacGCACCa- -3'
miRNA:   3'- acgCGGGa-----GCUGCGGCGGG------------CGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 44149 0.67 0.198223
Target:  5'- cGCGCagcgCUUCGcCGCCGCUCGuCGCCg- -3'
miRNA:   3'- aCGCG----GGAGCuGCGGCGGGC-GUGGgu -5'
24865 3' -65.5 NC_005284.1 + 33805 0.67 0.198223
Target:  5'- cGCGCCgUUCGuaaUCGCCCGCACgCAg -3'
miRNA:   3'- aCGCGG-GAGCugcGGCGGGCGUGgGU- -5'
24865 3' -65.5 NC_005284.1 + 21626 0.68 0.195261
Target:  5'- cGCGCCgcgCUCGACGCCgagcagcgugcgaucGCCgCGCACg-- -3'
miRNA:   3'- aCGCGG---GAGCUGCGG---------------CGG-GCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 30929 0.68 0.193307
Target:  5'- gGCGCCgUgGcgcuuuCGCCGCCgGCgaucACCCAa -3'
miRNA:   3'- aCGCGGgAgCu-----GCGGCGGgCG----UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 5694 0.68 0.183795
Target:  5'- cGCGCUgCUCGAUGCCGaguugcuuaCCGCGgUCAg -3'
miRNA:   3'- aCGCGG-GAGCUGCGGCg--------GGCGUgGGU- -5'
24865 3' -65.5 NC_005284.1 + 467 0.68 0.179196
Target:  5'- aGCGCCUggUCGGCGCaaaGCCgaaaaCACCCGa -3'
miRNA:   3'- aCGCGGG--AGCUGCGg--CGGgc---GUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 33475 0.68 0.174699
Target:  5'- cGCGCCgUCGGC-CgGCgCUGCugCCGa -3'
miRNA:   3'- aCGCGGgAGCUGcGgCG-GGCGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 34238 0.69 0.167713
Target:  5'- cUGCGCCgUCGAUGUccugcggcguaacugCGCgCGCAgCCAg -3'
miRNA:   3'- -ACGCGGgAGCUGCG---------------GCGgGCGUgGGU- -5'
24865 3' -65.5 NC_005284.1 + 38616 0.69 0.166006
Target:  5'- aGCGCCaUCGACG-CGCCgaGC-CCCAu -3'
miRNA:   3'- aCGCGGgAGCUGCgGCGGg-CGuGGGU- -5'
24865 3' -65.5 NC_005284.1 + 27794 0.69 0.166006
Target:  5'- cGCGCCCUUuucggacgaGugGCgUGCCCGCgaagaGCUCAa -3'
miRNA:   3'- aCGCGGGAG---------CugCG-GCGGGCG-----UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 23870 0.69 0.166006
Target:  5'- aGCGgCCaCGGCGcCCGCCCGaugcauCCCGa -3'
miRNA:   3'- aCGCgGGaGCUGC-GGCGGGCgu----GGGU- -5'
24865 3' -65.5 NC_005284.1 + 21905 0.69 0.166006
Target:  5'- cGCGUuuUCGGCGUCGCCgGCGacgaUCAg -3'
miRNA:   3'- aCGCGggAGCUGCGGCGGgCGUg---GGU- -5'
24865 3' -65.5 NC_005284.1 + 7715 0.69 0.166006
Target:  5'- gUGCGCCgaagCUCGugcCGCCGCCgGCGgcguaacucCCCGa -3'
miRNA:   3'- -ACGCGG----GAGCu--GCGGCGGgCGU---------GGGU- -5'
24865 3' -65.5 NC_005284.1 + 26276 0.69 0.161806
Target:  5'- gGCGCUCcaaauCGCCGCCgCGCACaCCGa -3'
miRNA:   3'- aCGCGGGagcu-GCGGCGG-GCGUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.